Aliases for PRR29-AS1 Gene

Data sources for PRR29-AS1 Gene:

RNA type for PRR29-AS1 Gene

lncRNA

Aliases for PRR29-AS1 Gene

External Ids for PRR29-AS1 Gene

Summaries for PRR29-AS1 Gene

GeneCards Summary for PRR29-AS1 Gene

PRR29-AS1 (PRR29 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for PRR29-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PRR29-AS1 Gene

Genomics for PRR29-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for PRR29-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J063997 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 250.7 +1.6 1573 2.6 ZIC2 MXD4 SIN3A SIX4 ZNF341 MNT ZBTB7B ZNF217 THAP11 MBD2 PRR29 PRR29-AS1 CEP95 ENSG00000265982 KPNA2P3 ENSG00000265218 PLEKHM1P1 ENSG00000265298 POLG2 DDX5
GH17J064000 Promoter 0.7 Ensembl 250.7 -0.4 -402 0.2 ZNF664 ATF4 CEBPB ATF3 TRIM24 ATF7 ATF2 BCOR SMARCA5 CEBPG PRR29 PRR29-AS1 piR-45146 piR-53421 ICAM2
GH17J064001 Enhancer 0.7 ENCODE dbSUPER 0.7 -2.2 -2225 1.3 CEBPA ETV4 GABPB1 NFIL3 HLF POLR2A GABPA CEBPB lnc-ICAM2-2 piR-45146 piR-53421 PRR29 PRR29-AS1 ICAM2
GH17J063994 Enhancer 0.2 FANTOM5 0.7 +4.8 4834 0.3 PRR29 PRR29-AS1 ENSG00000263489 SCN4A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PRR29-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for PRR29-AS1 Gene

Latest Assembly
chr17:63,994,698-63,999,899
(GRCh38/hg38)
Size:
5,202 bases
Orientation:
Minus strand

Previous Assembly
chr17:62,073,431-62,077,259
(GRCh37/hg19 by Entrez Gene)
Size:
3,829 bases
Orientation:
Minus strand

chr17:62,073,431-62,077,259
(GRCh37/hg19 by Ensembl)
Size:
3,829 bases
Orientation:
Minus strand

Genomic View for PRR29-AS1 Gene

Genes around PRR29-AS1 on UCSC Golden Path with GeneCards custom track
PRR29-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
PRR29-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PRR29-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PRR29-AS1 Gene

Proteins for PRR29-AS1 Gene

Post-translational modifications for PRR29-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PRR29-AS1 Gene

Domains & Families for PRR29-AS1 Gene

Gene Families for PRR29-AS1 Gene

genes like me logo Genes that share domains with PRR29-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PRR29-AS1 Gene

Function for PRR29-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PRR29-AS1 Gene

Localization for PRR29-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PRR29-AS1 Gene

Pathways & Interactions for PRR29-AS1 Gene

PathCards logo

SuperPathways for PRR29-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for PRR29-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PRR29-AS1 Gene

Drugs & Compounds for PRR29-AS1 Gene

No Compound Related Data Available

Transcripts for PRR29-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for PRR29-AS1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000023E400_9606 lncRNA 2929 4

RefSeq: NR_126169,

Ensembl: ENST00000580942 (view in UCSC) ,

LNCipedia: PRR29-AS1:1,

NONCODE: NONHSAT055254.2,

URS00001BB5C6_9606 lncRNA 891 4

Ensembl: ENST00000577545 (view in UCSC) ,

LncBook: HSALNT0243755,

LNCipedia: PRR29-AS1:2,

NONCODE: NONHSAT055256.2,

URS0000EEB178_9606 lncRNA 1994 1

Ensembl: ENST00000657561 (view in UCSC) ,

URS0000EEEECC_9606 lncRNA 1364 1

Ensembl: ENST00000662204 (view in UCSC) ,

URS00008BE947_9606 lncRNA 787 3

LncBook: HSALNT0243753,

LNCipedia: PRR29-AS1:3,

NONCODE: NONHSAT055253.2,

PRR29-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for PRR29-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for PRR29-AS1 Gene

No ASD Table

Relevant External Links for PRR29-AS1 Gene

GeneLoc Exon Structure for
PRR29-AS1

Expression for PRR29-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for PRR29-AS1

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PRR29-AS1 Gene

Orthologs for PRR29-AS1 Gene

Evolution for PRR29-AS1 Gene

ENSEMBL:
Gene Tree for PRR29-AS1 (if available)
TreeFam:
Gene Tree for PRR29-AS1 (if available)
Alliance of Genome Resources:
Additional Orthologs for PRR29-AS1

No data available for Orthologs for PRR29-AS1 Gene

Paralogs for PRR29-AS1 Gene

No data available for Paralogs for PRR29-AS1 Gene

Variants for PRR29-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for PRR29-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for PRR29-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PRR29-AS1
Leiden Open Variation Database (LOVD)
PRR29-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for PRR29-AS1 Gene

Disorders for PRR29-AS1 Gene

Additional Disease Information for PRR29-AS1

No disorders were found for PRR29-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PRR29-AS1 Gene

Publications for PRR29-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for PRR29-AS1 Gene

Products for PRR29-AS1 Gene

Sources for PRR29-AS1 Gene