Aliases for PRR29-AS1 Gene

Subcategory (RNA class) for PRR29-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for PRR29-AS1 Gene

  • PRR29 Antisense RNA 1 2 3 5
  • PRR29-AS1 2 168
  • HSALNG0118060 167
  • NONHSAG022485 92

External Ids for PRR29-AS1 Gene

Summaries for PRR29-AS1 Gene

GeneCards Summary for PRR29-AS1 Gene

PRR29-AS1 (PRR29 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for PRR29-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PRR29-AS1 Gene

Genomics for PRR29-AS1 Gene

GeneHancer (GH) Regulatory Elements for PRR29-AS1 Gene

Promoters and enhancers for PRR29-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J063997 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 500.7 +1.6 1573 2.6 HNRNPK ZBTB40 ZNF217 SIN3A NRF1 ZIC2 ZBTB26 SAP30 RFX1 U2AF2 PRR29 PRR29-AS1 SCN4A
GH17J064000 Promoter 0.7 Ensembl 500.7 -0.4 -402 0.2 TRIM24 CEBPG BCOR ZNF664 ATF4 CEBPB ATF3 ATF2 ATF7 SMARCA5 PRR29 PRR29-AS1 piR-45146 piR-53421
GH17J064001 Enhancer 0.7 ENCODE dbSUPER 0.7 -2.2 -2225 1.3 CEBPB POLR2G GABPB1 ETV4 NFIL3 HLF POLR2A NR3C1 ETV5 RBFOX2 lnc-ICAM2-2 piR-45146 piR-53421 PRR29 PRR29-AS1 ICAM2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PRR29-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PRR29-AS1 Gene

Genomic Locations for PRR29-AS1 Gene
chr17:63,995,418-63,999,899
(GRCh38/hg38)
Size:
4,482 bases
Orientation:
Minus strand
chr17:62,073,431-62,077,259
(GRCh37/hg19)
Size:
3,829 bases
Orientation:
Minus strand

Genomic View for PRR29-AS1 Gene

Genes around PRR29-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PRR29-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PRR29-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PRR29-AS1 Gene

Proteins for PRR29-AS1 Gene

Post-translational modifications for PRR29-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PRR29-AS1 Gene

Domains & Families for PRR29-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PRR29-AS1 Gene

Function for PRR29-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PRR29-AS1 Gene

Localization for PRR29-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PRR29-AS1 Gene

Pathways & Interactions for PRR29-AS1 Gene

PathCards logo

SuperPathways for PRR29-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for PRR29-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PRR29-AS1 Gene

Drugs & Compounds for PRR29-AS1 Gene

No Compound Related Data Available

Transcripts for PRR29-AS1 Gene

mRNA/cDNA for PRR29-AS1 Gene

6 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
4 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
4 NONCODE transcripts :
2 LncBook transcripts :
4 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for PRR29-AS1 Gene

No ASD Table

Relevant External Links for PRR29-AS1 Gene

GeneLoc Exon Structure for
PRR29-AS1

Expression for PRR29-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for PRR29-AS1

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PRR29-AS1 Gene

Orthologs for PRR29-AS1 Gene

Evolution for PRR29-AS1 Gene

ENSEMBL:
Gene Tree for PRR29-AS1 (if available)
TreeFam:
Gene Tree for PRR29-AS1 (if available)

No data available for Orthologs for PRR29-AS1 Gene

Paralogs for PRR29-AS1 Gene

No data available for Paralogs for PRR29-AS1 Gene

Variants for PRR29-AS1 Gene

Additional dbSNP identifiers (rs#s) for PRR29-AS1 Gene

Additional Variant Information for PRR29-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PRR29-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for PRR29-AS1 Gene

Disorders for PRR29-AS1 Gene

Additional Disease Information for PRR29-AS1

No disorders were found for PRR29-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PRR29-AS1 Gene

Publications for PRR29-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54

No data available for Mastermind for PRR29-AS1 Gene

Products for PRR29-AS1 Gene

Sources for PRR29-AS1 Gene