Aliases for PRPF38AP1 Gene

Aliases for PRPF38AP1 Gene

  • PRP38 Domain Containing A Pseudogene 1 2 3 5
  • PRP38 Pre-MRNA Processing Factor 38 Domain Containing A Pseudogene 3

External Ids for PRPF38AP1 Gene

Previous GeneCards Identifiers for PRPF38AP1 Gene

  • GC10P008204

Summaries for PRPF38AP1 Gene

GeneCards Summary for PRPF38AP1 Gene

PRPF38AP1 (PRP38 Domain Containing A Pseudogene 1) is a Pseudogene.

Additional gene information for PRPF38AP1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PRPF38AP1 Gene

Genomics for PRPF38AP1 Gene

GeneHancer (GH) Regulatory Elements for PRPF38AP1 Gene

Promoters and enhancers for PRPF38AP1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J008159 Enhancer 0.9 Ensembl ENCODE 500.7 -1.9 -1855 2 ZIC2 REST OSR2 ZNF585B SP2 ZNF184 FOS KLF13 OVOL3 ZSCAN5A PRPF38AP1 lnc-GATA3-11 RF00951-013
GH10J008174 Enhancer 0.4 ENCODE 0.4 +13.7 13743 0.2 TRIM28 L3MBTL2 MAX MGA piR-48820-011 PRPF38AP1 lnc-GATA3-11
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PRPF38AP1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PRPF38AP1 Gene

Genomic Locations for PRPF38AP1 Gene
chr10:8,161,260-8,162,194
(GRCh38/hg38)
Size:
935 bases
Orientation:
Plus strand
chr10:8,203,223-8,204,157
(GRCh37/hg19)
Size:
935 bases
Orientation:
Plus strand

Genomic View for PRPF38AP1 Gene

Genes around PRPF38AP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PRPF38AP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PRPF38AP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PRPF38AP1 Gene

Proteins for PRPF38AP1 Gene

Post-translational modifications for PRPF38AP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PRPF38AP1 Gene

Domains & Families for PRPF38AP1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PRPF38AP1 Gene

Function for PRPF38AP1 Gene

Phenotypes From GWAS Catalog for PRPF38AP1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PRPF38AP1 Gene

Localization for PRPF38AP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PRPF38AP1 Gene

Pathways & Interactions for PRPF38AP1 Gene

PathCards logo

SuperPathways for PRPF38AP1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for PRPF38AP1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PRPF38AP1 Gene

Drugs & Compounds for PRPF38AP1 Gene

No Compound Related Data Available

Transcripts for PRPF38AP1 Gene

mRNA/cDNA for PRPF38AP1 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for PRPF38AP1 Gene

No ASD Table

Relevant External Links for PRPF38AP1 Gene

GeneLoc Exon Structure for
PRPF38AP1

Expression for PRPF38AP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for PRPF38AP1 Gene

mRNA differential expression in normal tissues according to GTEx for PRPF38AP1 Gene

This gene is overexpressed in Liver (x48.1) and Cervix - Endocervix (x4.9).
genes like me logo Genes that share expression patterns with PRPF38AP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PRPF38AP1 Gene

Orthologs for PRPF38AP1 Gene

Evolution for PRPF38AP1 Gene

ENSEMBL:
Gene Tree for PRPF38AP1 (if available)
TreeFam:
Gene Tree for PRPF38AP1 (if available)

No data available for Orthologs for PRPF38AP1 Gene

Paralogs for PRPF38AP1 Gene

No data available for Paralogs for PRPF38AP1 Gene

Variants for PRPF38AP1 Gene

Additional Variant Information for PRPF38AP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PRPF38AP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for PRPF38AP1 Gene

Disorders for PRPF38AP1 Gene

No disorders were found for PRPF38AP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PRPF38AP1 Gene

Publications for PRPF38AP1 Gene

No publications were found for PRPF38AP1 Gene.

No data available for Mastermind for PRPF38AP1 Gene

Products for PRPF38AP1 Gene

Sources for PRPF38AP1 Gene