Aliases for PROX1-AS1 Gene

Subcategory (RNA class) for PROX1-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for PROX1-AS1 Gene

  • PROX1 Antisense RNA 1 2 3 5
  • PROX1-AS1 2 5 165
  • PROX1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • NONHSAG004261.2 91
  • HSALNG0010460 164

External Ids for PROX1-AS1 Gene

Previous GeneCards Identifiers for PROX1-AS1 Gene

  • GC01M213994

Summaries for PROX1-AS1 Gene

GeneCards Summary for PROX1-AS1 Gene

PROX1-AS1 (PROX1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for PROX1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PROX1-AS1 Gene

Genomics for PROX1-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for PROX1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J213986 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 -0.2 -192 5.4 HNRNPL GATAD2A PRDM10 ZNF629 REST ZNF512 NFKBIZ RFX5 KDM1A ZNF692 PROX1 PROX1-AS1 ENSG00000274895 lnc-SMYD2-1 SMYD2
GH01J214263 Enhancer 0.6 Ensembl 4.8 -276.0 -275993 1.4 RNF2 ZIC2 MNT ZBTB44 ZBTB20 OSR2 ZNF189 FEZF1 PRDM6 SP7 piR-35436 CENPF PROX1-AS1 piR-42613-007 SMYD2 lnc-PTPN14-2 PROX1
GH01J213661 Enhancer 0.2 Ensembl 4.7 +327.3 327307 0.8 PROX1-AS1 RF00994-086 HSALNG0010448 LOC105372912 PROX1 RPS6KC1
GH01J213984 Enhancer 0.9 FANTOM5 dbSUPER 0.7 +4.0 3951 0.1 GATAD2A PRDM10 ZNF629 ZNF692 PRDM1 ZIC2 PATZ1 EZH2 ZNF341 ZNF561 PROX1 ENSG00000274895 PROX1-AS1 SMYD2
GH01J213985 Promoter/Enhancer 0.8 Ensembl dbSUPER 0.7 +2.8 2807 0.2 RBFOX2 EZH2 CBX8 ZNF202 YY1 ENSG00000274895 PROX1 PROX1-AS1 SMYD2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PROX1-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for PROX1-AS1 Gene

Genomic Locations for PROX1-AS1 Gene
chr1:213,817,227-213,988,508
(GRCh38/hg38)
Size:
171,282 bases
Orientation:
Minus strand
chr1:213,991,094-214,160,973
(GRCh37/hg19)
Size:
169,880 bases
Orientation:
Minus strand

Genomic View for PROX1-AS1 Gene

Genes around PROX1-AS1 on UCSC Golden Path with GeneCards custom track
PROX1-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
PROX1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PROX1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PROX1-AS1 Gene

Proteins for PROX1-AS1 Gene

Post-translational modifications for PROX1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PROX1-AS1 Gene

Domains & Families for PROX1-AS1 Gene

Gene Families for PROX1-AS1 Gene

genes like me logo Genes that share domains with PROX1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PROX1-AS1 Gene

Function for PROX1-AS1 Gene

Phenotypes From GWAS Catalog for PROX1-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PROX1-AS1 Gene

Localization for PROX1-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for PROX1-AS1 gene
Compartment Confidence
golgi apparatus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PROX1-AS1 Gene

Pathways & Interactions for PROX1-AS1 Gene

PathCards logo

SuperPathways for PROX1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for PROX1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PROX1-AS1 Gene

Drugs & Compounds for PROX1-AS1 Gene

No Compound Related Data Available

Transcripts for PROX1-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for PROX1-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00009B11CB_9606 lncRNA 5266 4

Ensembl: ENST00000433082 (view in UCSC) ,

LncBook: HSALNT0021656,

LNCipedia: PROX1-AS1:7,

NONCODE: NONHSAT152889.1,

URS0000812192_9606 lncRNA 3399 4

HGNC: 43656,

RefSeq: NR_037850,

LNCipedia: PROX1-AS1:74,

NONCODE: NONHSAT152891.1,

URS00002453A4_9606 lncRNA 973 4

Ensembl: ENST00000608138 (view in UCSC) ,

LncBook: HSALNT0021705,

LNCipedia: PROX1-AS1:54,

NONCODE: NONHSAT152898.1,

URS00009B4928_9606 lncRNA 954 4

Ensembl: ENST00000630180 (view in UCSC) ,

LncBook: HSALNT0021700,

LNCipedia: PROX1-AS1:15,

NONCODE: NONHSAT152910.1,

URS00009B3E87_9606 lncRNA 921 4

Ensembl: ENST00000630538 (view in UCSC) ,

LncBook: HSALNT0021699,

LNCipedia: PROX1-AS1:17,

NONCODE: NONHSAT152909.1,

PROX1-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for PROX1-AS1 Gene

3 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for PROX1-AS1 Gene

No ASD Table

Relevant External Links for PROX1-AS1 Gene

GeneLoc Exon Structure for
PROX1-AS1

Expression for PROX1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for PROX1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for PROX1-AS1 Gene

This gene is overexpressed in Liver (x6.7) and Brain - Spinal cord (cervical c-1) (x5.6).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for PROX1-AS1

genes like me logo Genes that share expression patterns with PROX1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PROX1-AS1 Gene

Orthologs for PROX1-AS1 Gene

Evolution for PROX1-AS1 Gene

ENSEMBL:
Gene Tree for PROX1-AS1 (if available)
TreeFam:
Gene Tree for PROX1-AS1 (if available)

No data available for Orthologs for PROX1-AS1 Gene

Paralogs for PROX1-AS1 Gene

No data available for Paralogs for PROX1-AS1 Gene

Variants for PROX1-AS1 Gene

Additional dbSNP identifiers (rs#s) for PROX1-AS1 Gene

Additional Variant Information for PROX1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PROX1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for PROX1-AS1 Gene

Disorders for PROX1-AS1 Gene

No disorders were found for PROX1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PROX1-AS1 Gene

Publications for PROX1-AS1 Gene

  1. Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility. (PMID: 24509480) DIAbetes Genetics Replication And Meta-analysis (DIAGRAM) Consortium … Morris AP (Nature genetics 2014) 3
  2. A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance. (PMID: 22581228) Manning AK … Langenberg C (Nature genetics 2012) 3
  3. A comprehensive genetic association study of Alzheimer disease in African Americans. (PMID: 22159054) Logue MW … Multi-Institutional Research on Alzheimer Genetic Epidemiology (MIRAGE) Study Group (Archives of neurology 2011) 3
  4. New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk. (PMID: 20081858) Dupuis J … Barroso I (Nature genetics 2010) 3
  5. Multistage genomewide association study identifies a locus at 1q41 associated with rate of HIV-1 disease progression to clinical AIDS. (PMID: 20064070) Herbeck JT … Mullins JI (The Journal of infectious diseases 2010) 3

Products for PROX1-AS1 Gene

Sources for PROX1-AS1 Gene