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Aliases for PRKX-AS1 Gene

Subcategory (RNA class) for PRKX-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for PRKX-AS1 Gene

  • PRKX Antisense RNA 1 2 3 5
  • PRKX Antisense RNA 1 (Non-Protein Coding) 2 3

External Ids for PRKX-AS1 Gene

Previous GeneCards Identifiers for PRKX-AS1 Gene

  • GC00U933775
  • GC0XP003578

Summaries for PRKX-AS1 Gene

GeneCards Summary for PRKX-AS1 Gene

PRKX-AS1 (PRKX Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for PRKX-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PRKX-AS1 Gene

Genomics for PRKX-AS1 Gene

GeneHancer (GH) Regulatory Elements for PRKX-AS1 Gene

Promoters and enhancers for PRKX-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ003660 Promoter 0.5 Ensembl 600.7 +1.4 1414 0.2 PRKX-AS1 PRKX
GH0XJ003663 Promoter/Enhancer 0.7 Ensembl ENCODE 5.7 +4.4 4387 1.3 PRKX-AS1 PRKX
GH0XJ003678 Enhancer 0.6 Ensembl 6.2 +18.0 18014 5.4 ZNF316 NFE2 ZNF157 MAFG ATF2 ZBTB33 DACH1 EMSY PRKX-AS1 PRKX
GH0XJ003691 Enhancer 0.3 Ensembl 4.5 +31.9 31914 0.8 PKNOX1 PRKX-AS1 PRKX
GH0XJ003710 Promoter/Enhancer 2.1 EPDnew FANTOM5 Ensembl ENCODE 0.2 +53.5 53514 5.2 ZFX NKRF MLLT1 ZNF687 MYC NCOA6 POLR2A ZNF639 SMARCA4 IKZF1 PRKX PRKX-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PRKX-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PRKX-AS1 Gene

Genomic Locations for PRKX-AS1 Gene
chrX:3,659,487-3,668,192
(GRCh38/hg38)
Size:
8,706 bases
Orientation:
Plus strand
chrX:3,577,528-3,586,233
(GRCh37/hg19)
Size:
8,706 bases
Orientation:
Plus strand

Genomic View for PRKX-AS1 Gene

Genes around PRKX-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PRKX-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PRKX-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PRKX-AS1 Gene

Proteins for PRKX-AS1 Gene

Post-translational modifications for PRKX-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PRKX-AS1 Gene

Domains & Families for PRKX-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PRKX-AS1 Gene

Function for PRKX-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PRKX-AS1 Gene

Localization for PRKX-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PRKX-AS1 Gene

Pathways & Interactions for PRKX-AS1 Gene

PathCards logo

SuperPathways for PRKX-AS1 Gene

No Data Available

Interacting Proteins for PRKX-AS1 Gene

Gene Ontology (GO) - Biological Process for PRKX-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PRKX-AS1 Gene

Drugs & Compounds for PRKX-AS1 Gene

No Compound Related Data Available

Transcripts for PRKX-AS1 Gene

mRNA/cDNA for PRKX-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for PRKX-AS1 Gene

No ASD Table

Relevant External Links for PRKX-AS1 Gene

GeneLoc Exon Structure for
PRKX-AS1
ECgene alternative splicing isoforms for
PRKX-AS1

Expression for PRKX-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for PRKX-AS1 Gene

genes like me logo Genes that share expression patterns with PRKX-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PRKX-AS1 Gene

Orthologs for PRKX-AS1 Gene

Evolution for PRKX-AS1 Gene

ENSEMBL:
Gene Tree for PRKX-AS1 (if available)
TreeFam:
Gene Tree for PRKX-AS1 (if available)

No data available for Orthologs for PRKX-AS1 Gene

Paralogs for PRKX-AS1 Gene

No data available for Paralogs for PRKX-AS1 Gene

Variants for PRKX-AS1 Gene

Sequence variations from dbSNP and Humsavar for PRKX-AS1 Gene

SNP ID Clin Chr 0X pos Variation AA Info Type
rs1001114503 -- 3,662,288(+) C/T intron_variant
rs1001316749 -- 3,660,600(+) T/C intron_variant
rs1002098079 -- 3,660,103(+) T/A/C intron_variant
rs1002734206 -- 3,663,446(+) ACACACACACACACACACACACAAAAA/A intron_variant
rs1003330097 -- 3,665,626(+) T/G intron_variant

Additional Variant Information for PRKX-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PRKX-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for PRKX-AS1 Gene

Disorders for PRKX-AS1 Gene

Additional Disease Information for PRKX-AS1

No disorders were found for PRKX-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PRKX-AS1 Gene

Publications for PRKX-AS1 Gene

No publications were found for PRKX-AS1 Gene.

Products for PRKX-AS1 Gene

Sources for PRKX-AS1 Gene

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