Aliases for PRKG2-AS1 Gene

Subcategory (RNA class) for PRKG2-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for PRKG2-AS1 Gene

  • PRKG2 Antisense RNA 1 2 3
  • Novel Transcript 5
  • NONHSAG038312.2 91
  • HSALNG0035486 164
  • AC139722.1 5
  • Lnc-BMP3-1 165

External Ids for PRKG2-AS1 Gene

Summaries for PRKG2-AS1 Gene

GeneCards Summary for PRKG2-AS1 Gene

PRKG2-AS1 (PRKG2 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for PRKG2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PRKG2-AS1 Gene

Genomics for PRKG2-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for PRKG2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J081162 Enhancer 0.8 Ensembl ENCODE 600.7 +0.0 35 3.9 ZNF629 POLR2A CEBPB SP1 CTBP1 JUN FOS PKNOX1 JUND EP300 PRKG2-AS1 PRKG2 piR-60885-093 BMP3
GH04J081135 Enhancer 0.8 FANTOM5 Ensembl ENCODE 12.1 -27.9 -27857 2.7 CEBPB BHLHE40 MAFK SPI1 PRKG2-AS1 piR-34822-247 piR-37895-116 PRKG2 BMP3
GH04J081206 Enhancer 0.8 Ensembl ENCODE dbSUPER 10.5 +42.9 42855 3.5 CEBPG CEBPB EP300 ATF4 FOS RNU5A-2P PRKG2-AS1 HSALNG0035487 PRKG2 piR-60885-093 BMP3
GH04J081195 Enhancer 0.6 ENCODE dbSUPER 11.6 +32.3 32307 4.1 CREB1 CUX1 FEZF1 HLF PRKG2 PRKG2-AS1 FGF5 piR-60885-093 HSALNG0035487 BMP3
GH04J081221 Enhancer 0.5 Ensembl dbSUPER 10.8 +56.8 56778 0.6 NFE2 NFE2L2 RNU5A-2P PRKG2-AS1 PRKG2 piR-32688-011 RASGEF1B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PRKG2-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for PRKG2-AS1 Gene

Genomic Locations for PRKG2-AS1 Gene
chr4:81,164,922-81,193,396
(GRCh38/hg38)
Size:
28,475 bases
Orientation:
Plus strand
chr4:82,086,094-82,114,549
(GRCh37/hg19)
Size:
28,456 bases
Orientation:
Plus strand

Genomic View for PRKG2-AS1 Gene

Genes around PRKG2-AS1 on UCSC Golden Path with GeneCards custom track
PRKG2-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
PRKG2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PRKG2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PRKG2-AS1 Gene

Proteins for PRKG2-AS1 Gene

Post-translational modifications for PRKG2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PRKG2-AS1 Gene

Domains & Families for PRKG2-AS1 Gene

Gene Families for PRKG2-AS1 Gene

genes like me logo Genes that share domains with PRKG2-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PRKG2-AS1 Gene

Function for PRKG2-AS1 Gene

Phenotypes From GWAS Catalog for PRKG2-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PRKG2-AS1 Gene

Localization for PRKG2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PRKG2-AS1 Gene

Pathways & Interactions for PRKG2-AS1 Gene

PathCards logo

SuperPathways for PRKG2-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for PRKG2-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PRKG2-AS1 Gene

Drugs & Compounds for PRKG2-AS1 Gene

No Compound Related Data Available

Transcripts for PRKG2-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for PRKG2-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003F5AD3_9606 lncRNA 782 4

RefSeq: NR_125908,

Ensembl: ENST00000512502 (view in UCSC) ,

LNCipedia: lnc-BMP3-1:1,

NONCODE: NONHSAT097144.2,

URS00004B9CFE_9606 lncRNA 432 4

Ensembl: ENST00000505175 (view in UCSC) ,

LncBook: HSALNT0074303,

LNCipedia: lnc-BMP3-1:2,

NONCODE: NONHSAT097145.2,

URS0000EF53DE_9606 lncRNA 665 1

Ensembl: ENST00000663090 (view in UCSC) ,

URS00009BDEF4_9606 lncRNA 852 2

LncBook: HSALNT0074301,

NONCODE: NONHSAT198765.1,

URS00009BE450_9606 lncRNA 896 1

NONCODE: NONHSAT198764.1,

PRKG2-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for PRKG2-AS1 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for PRKG2-AS1 Gene

No ASD Table

Relevant External Links for PRKG2-AS1 Gene

GeneLoc Exon Structure for
PRKG2-AS1

Expression for PRKG2-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for PRKG2-AS1

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PRKG2-AS1 Gene

Orthologs for PRKG2-AS1 Gene

Evolution for PRKG2-AS1 Gene

ENSEMBL:
Gene Tree for PRKG2-AS1 (if available)
TreeFam:
Gene Tree for PRKG2-AS1 (if available)

No data available for Orthologs for PRKG2-AS1 Gene

Paralogs for PRKG2-AS1 Gene

No data available for Paralogs for PRKG2-AS1 Gene

Variants for PRKG2-AS1 Gene

Additional dbSNP identifiers (rs#s) for PRKG2-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for PRKG2-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2526820 CNV deletion 19546169
esv3601143 CNV gain 21293372
nsv829984 CNV gain 17160897

Additional Variant Information for PRKG2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PRKG2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for PRKG2-AS1 Gene

Disorders for PRKG2-AS1 Gene

Additional Disease Information for PRKG2-AS1

No disorders were found for PRKG2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PRKG2-AS1 Gene

Publications for PRKG2-AS1 Gene

No publications were found for PRKG2-AS1 Gene.

No data available for Mastermind for PRKG2-AS1 Gene

Products for PRKG2-AS1 Gene

Sources for PRKG2-AS1 Gene