Aliases for PRKG1-AS1 Gene

Subcategory (RNA class) for PRKG1-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for PRKG1-AS1 Gene

  • PRKG1 Antisense RNA 1 2 3 5
  • PRKG1-AS1 2 5 165
  • RP11-573I11.2 2 3
  • NONHSAG005920.2 91
  • HSALNG0077999 164

External Ids for PRKG1-AS1 Gene

Previous GeneCards Identifiers for PRKG1-AS1 Gene

  • GC10M053992

Summaries for PRKG1-AS1 Gene

GeneCards Summary for PRKG1-AS1 Gene

PRKG1-AS1 (PRKG1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with PRKG1-AS1 include Rigid Spine Muscular Dystrophy 1.

Additional gene information for PRKG1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PRKG1-AS1 Gene

Genomics for PRKG1-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for PRKG1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J052312 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 600.1 +108.4 108357 9.1 HNRNPL CREB1 CTCF ATF7 PRDM10 ZNF629 SOX13 KDM1A ZNF692 ZNF7 DKK1 PRKG1-AS1 MBL2 piR-37026-063
GH10J052424 Enhancer 0.5 Ensembl 600.7 +1.9 1914 0.2 TOE1 CEBPB RAD51 ZBTB17 USF2 ZNF366 FOS PRKG1-AS1 LNCAROD THAP12P3 DKK1 MBL2
GH10J052423 Enhancer 0.4 FANTOM5 600.7 +1.6 1590 0.2 CEBPB FOS USF2 PRKG1-AS1 THAP12P3 DKK1 MBL2
GH10J052425 Enhancer 0.2 Ensembl 600.7 +0.2 214 0.4 PRKG1-AS1 THAP12P3 DKK1 MBL2
GH10J052484 Enhancer 1.2 FANTOM5 Ensembl ENCODE dbSUPER 12 -61.3 -61307 5.4 CTCF RAD21 JUND CEBPB JUN SMC3 EP300 FOSL2 RFX5 BHLHE40 lnc-DKK1-5 DKK1 PRKG1-AS1 LNCAROD MBL2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PRKG1-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for PRKG1-AS1 Gene

Genomic Locations for PRKG1-AS1 Gene
chr10:52,194,150-52,425,415
(GRCh38/hg38)
Size:
231,266 bases
Orientation:
Minus strand
chr10:53,990,502-54,073,888
(GRCh37/hg19)
Size:
83,387 bases
Orientation:
Minus strand

Genomic View for PRKG1-AS1 Gene

Genes around PRKG1-AS1 on UCSC Golden Path with GeneCards custom track
PRKG1-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
PRKG1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PRKG1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PRKG1-AS1 Gene

Proteins for PRKG1-AS1 Gene

Post-translational modifications for PRKG1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PRKG1-AS1 Gene

Domains & Families for PRKG1-AS1 Gene

Gene Families for PRKG1-AS1 Gene

genes like me logo Genes that share domains with PRKG1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PRKG1-AS1 Gene

Function for PRKG1-AS1 Gene

Phenotypes From GWAS Catalog for PRKG1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PRKG1-AS1 Gene

Localization for PRKG1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PRKG1-AS1 Gene

Pathways & Interactions for PRKG1-AS1 Gene

PathCards logo

SuperPathways for PRKG1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for PRKG1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PRKG1-AS1 Gene

Drugs & Compounds for PRKG1-AS1 Gene

No Compound Related Data Available

Transcripts for PRKG1-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for PRKG1-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000047E0F3_9606 lncRNA 1111 4

Ensembl: ENST00000426785 (view in UCSC) ,

LncBook: HSALNT0162734,

LNCipedia: PRKG1-AS1:9,

NONCODE: NONHSAT013421.2,

URS000055EF1E_9606 lncRNA 971 4

Ensembl: ENST00000420193 (view in UCSC) ,

LncBook: HSALNT0162742,

LNCipedia: PRKG1-AS1:3,

NONCODE: NONHSAT139977.2,

URS000075EB1A_9606 lncRNA 2253 2

HGNC: 45029,

RefSeq: NR_038277,

URS0000EF31C0_9606 lncRNA 2977 1

Ensembl: ENST00000658196 (view in UCSC) ,

URS0000DB8FC2_9606 lncRNA 2215 1

Ensembl: ENST00000649494 (view in UCSC) ,

PRKG1-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for PRKG1-AS1 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for PRKG1-AS1 Gene

No ASD Table

Relevant External Links for PRKG1-AS1 Gene

GeneLoc Exon Structure for
PRKG1-AS1

Expression for PRKG1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for PRKG1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for PRKG1-AS1 Gene

This gene is overexpressed in Artery - Aorta (x6.2) and Artery - Tibial (x4.2).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for PRKG1-AS1

SOURCE GeneReport for Unigene cluster for PRKG1-AS1 Gene:

Hs.584791
genes like me logo Genes that share expression patterns with PRKG1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PRKG1-AS1 Gene

Orthologs for PRKG1-AS1 Gene

Evolution for PRKG1-AS1 Gene

ENSEMBL:
Gene Tree for PRKG1-AS1 (if available)
TreeFam:
Gene Tree for PRKG1-AS1 (if available)

No data available for Orthologs for PRKG1-AS1 Gene

Paralogs for PRKG1-AS1 Gene

No data available for Paralogs for PRKG1-AS1 Gene

Variants for PRKG1-AS1 Gene

Additional dbSNP identifiers (rs#s) for PRKG1-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for PRKG1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv99e201 CNV deletion 23290073
esv2051136 CNV deletion 18987734
esv2669039 CNV deletion 23128226
esv2736829 CNV deletion 23290073
esv2736851 CNV deletion 23290073
esv275139 CNV loss 21479260
esv3623245 CNV loss 21293372
nsv1045692 CNV gain 25217958
nsv1147350 CNV deletion 26484159

Additional Variant Information for PRKG1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PRKG1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for PRKG1-AS1 Gene

Disorders for PRKG1-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for PRKG1-AS1 Gene - From: DISEASES

Disorder Aliases PubMed IDs
rigid spine muscular dystrophy 1
  • rss
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with PRKG1-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for PRKG1-AS1 Gene

Publications for PRKG1-AS1 Gene

  1. Long noncoding RNA expression profile in fibroblast-like synoviocytes from patients with rheumatoid arthritis. (PMID: 27716329) Zhang Y … Li XJ (Arthritis research & therapy 2016) 2 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for PRKG1-AS1 Gene

Sources for PRKG1-AS1 Gene