Aliases for PRKG1-AS1 Gene

Subcategory (RNA class) for PRKG1-AS1 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for PRKG1-AS1 Gene

  • PRKG1 Antisense RNA 1 2 3 5
  • PRKG1-AS1 2 170
  • RP11-573I11.2 3
  • HSALNG0077999 169
  • NONHSAG005920 94

External Ids for PRKG1-AS1 Gene

Previous GeneCards Identifiers for PRKG1-AS1 Gene

  • GC10M053992

Summaries for PRKG1-AS1 Gene

GeneCards Summary for PRKG1-AS1 Gene

PRKG1-AS1 (PRKG1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for PRKG1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PRKG1-AS1 Gene

Genomics for PRKG1-AS1 Gene

GeneHancer (GH) Regulatory Elements for PRKG1-AS1 Gene

Promoters and enhancers for PRKG1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J052424 Enhancer 0.5 Ensembl 750.6 +1.9 1914 0.2 CEBPB ZBTB17 RAD51 USF2 ZNF366 FOS PRKG1-AS1 LNCAROD THAP12P3
GH10J052423 Enhancer 0.4 FANTOM5 750.6 +1.6 1590 0.2 CEBPB FOS PRKG1-AS1 THAP12P3
GH10J052425 Enhancer 0.2 Ensembl 750.6 +0.2 214 0.4 PRKG1-AS1 THAP12P3
GH10J052484 Enhancer 1.2 FANTOM5 Ensembl ENCODE dbSUPER 12 -61.3 -61307 5.4 CTCF RAD21 POLR2A CEBPB JUN JUND EP300 RFX5 SMC3 USF2 lnc-DKK1-5 DKK1 PRKG1-AS1 LNCAROD
GH10J052332 Enhancer 0.9 Ensembl ENCODE dbSUPER 11.4 +90.6 90623 3.6 HLF ELF3 PPARG ZNF384 JUN JUND FOXA2 TEAD1 FOXP1 FOSL2 DKK1 PRKG1-AS1 piR-37026-063
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PRKG1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PRKG1-AS1 Gene

Genomic Locations for PRKG1-AS1 Gene
chr10:52,194,150-52,425,415
(GRCh38/hg38)
Size:
231,266 bases
Orientation:
Minus strand
chr10:53,990,502-54,073,888
(GRCh37/hg19)
Size:
83,387 bases
Orientation:
Minus strand

Genomic View for PRKG1-AS1 Gene

Genes around PRKG1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PRKG1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PRKG1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PRKG1-AS1 Gene

Proteins for PRKG1-AS1 Gene

Post-translational modifications for PRKG1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PRKG1-AS1 Gene

Domains & Families for PRKG1-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PRKG1-AS1 Gene

Function for PRKG1-AS1 Gene

Phenotypes From GWAS Catalog for PRKG1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PRKG1-AS1 Gene

Localization for PRKG1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PRKG1-AS1 Gene

Pathways & Interactions for PRKG1-AS1 Gene

PathCards logo

SuperPathways for PRKG1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for PRKG1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PRKG1-AS1 Gene

Drugs & Compounds for PRKG1-AS1 Gene

No Compound Related Data Available

Transcripts for PRKG1-AS1 Gene

mRNA/cDNA for PRKG1-AS1 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(6) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(8) NONCODE transcripts :
(20) RNACentral transcripts :
(9) LncBook transcripts :
(16) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for PRKG1-AS1 Gene

No ASD Table

Relevant External Links for PRKG1-AS1 Gene

GeneLoc Exon Structure for
PRKG1-AS1
ECgene alternative splicing isoforms for
PRKG1-AS1

Expression for PRKG1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for PRKG1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for PRKG1-AS1 Gene

This gene is overexpressed in Artery - Aorta (x6.2) and Artery - Tibial (x4.2).

SOURCE GeneReport for Unigene cluster for PRKG1-AS1 Gene:

Hs.584791
genes like me logo Genes that share expression patterns with PRKG1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PRKG1-AS1 Gene

Orthologs for PRKG1-AS1 Gene

Evolution for PRKG1-AS1 Gene

ENSEMBL:
Gene Tree for PRKG1-AS1 (if available)
TreeFam:
Gene Tree for PRKG1-AS1 (if available)

No data available for Orthologs for PRKG1-AS1 Gene

Paralogs for PRKG1-AS1 Gene

No data available for Paralogs for PRKG1-AS1 Gene

Variants for PRKG1-AS1 Gene

Sequence variations from dbSNP and Humsavar for PRKG1-AS1 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000452599 -- 52,301,154(-) T/C intron_variant
rs1000479535 -- 52,297,097(-) TTTT/TTTTT non_coding_transcript_variant
rs1000527102 -- 52,308,046(-) C/T intron_variant
rs1000642129 -- 52,307,346(-) A/G intron_variant
rs1001025075 -- 52,308,307(-) T/TT intron_variant

Structural Variations from Database of Genomic Variants (DGV) for PRKG1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv99e201 CNV deletion 23290073
esv2051136 CNV deletion 18987734
esv2669039 CNV deletion 23128226
esv2736829 CNV deletion 23290073
esv2736851 CNV deletion 23290073
esv275139 CNV loss 21479260
esv3623245 CNV loss 21293372
nsv1045692 CNV gain 25217958
nsv1147350 CNV deletion 26484159

Additional Variant Information for PRKG1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PRKG1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for PRKG1-AS1 Gene

Disorders for PRKG1-AS1 Gene

Additional Disease Information for PRKG1-AS1

No disorders were found for PRKG1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PRKG1-AS1 Gene

Publications for PRKG1-AS1 Gene

  1. Long noncoding RNA expression profile in fibroblast-like synoviocytes from patients with rheumatoid arthritis. (PMID: 27716329) Zhang Y … Li XJ (Arthritis research & therapy 2016) 2 3 56
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

Products for PRKG1-AS1 Gene

Sources for PRKG1-AS1 Gene