Aliases for PRKCQ-AS1 Gene

Data sources for PRKCQ-AS1 Gene:

RNA type for PRKCQ-AS1 Gene

lncRNA

Aliases for PRKCQ-AS1 Gene

External Ids for PRKCQ-AS1 Gene

Previous GeneCards Identifiers for PRKCQ-AS1 Gene

  • GC10P006624

Summaries for PRKCQ-AS1 Gene

GeneCards Summary for PRKCQ-AS1 Gene

PRKCQ-AS1 (PRKCQ Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for PRKCQ-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PRKCQ-AS1 Gene

Genomics for PRKCQ-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for PRKCQ-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J006573 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 274 0.0 -17 14 IKZF1 MYC ZNF592 POLR2A ZIC2 MXD4 NONO REST CTCF SMAD5 PRKCQ-AS1 PRKCQ lnc-PRKCQ-3 HSALNG0075965 PFKFB3
GH10J006470 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 12.6 -106.9 -106866 5.2 NCOR1 IKZF1 ZNF592 NFIC REST SMAD5 HES1 MBD2 TBP ARNT TASOR2 PRKCQ PRKCQ-AS1 ENSG00000232807 RBM17 FBH1 ENSG00000226647 NRBF2P5 PFKFB3 IL15RA
GH10J006541 Enhancer 1.1 FANTOM5 ENCODE dbSUPER 12.3 -36.5 -36466 5.1 TRIM22 NR2C1 FOXA2 BHLHE40 SPI1 IKZF1 BMI1 NR2F1 ATF2 TCF12 PRKCQ PRKCQ-AS1 piR-41525-044 lnc-IL2RA-6 PFKFB3
GH10J006513 Enhancer 1 Ensembl ENCODE dbSUPER 12.1 -63.1 -63097 8.6 NCOR1 MBD2 TAL1 PRDM6 PRDM10 MAFG TCF12 MTA2 MAFK TEAD4 PRKCQ PRKCQ-AS1 lnc-IL2RA-6 lnc-PFKFB3-13 PFKFB3
GH10J006507 Enhancer 1 Ensembl ENCODE dbSUPER 11.6 -72.8 -72804 0.9 BCL11A TRIM22 IRF4 BHLHE40 BATF ELF1 ZNF24 IKZF1 NR2F1 ATF2 PRKCQ PRKCQ-AS1 lnc-IL2RA-6 lnc-PFKFB3-13 PFKFB3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PRKCQ-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for PRKCQ-AS1 Gene

Latest Assembly
chr10:6,580,398-6,616,921
(GRCh38/hg38)
Size:
36,524 bases
Orientation:
Plus strand

Previous Assembly
chr10:6,622,387-6,627,323
(GRCh37/hg19 by Entrez Gene)
Size:
4,937 bases
Orientation:
Plus strand

chr10:6,622,381-6,658,414
(GRCh37/hg19 by Ensembl)
Size:
36,034 bases
Orientation:
Plus strand

Genomic View for PRKCQ-AS1 Gene

Genes around PRKCQ-AS1 on UCSC Golden Path with GeneCards custom track
PRKCQ-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
PRKCQ-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PRKCQ-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PRKCQ-AS1 Gene

Proteins for PRKCQ-AS1 Gene

Post-translational modifications for PRKCQ-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PRKCQ-AS1 Gene

Domains & Families for PRKCQ-AS1 Gene

Gene Families for PRKCQ-AS1 Gene

genes like me logo Genes that share domains with PRKCQ-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PRKCQ-AS1 Gene

Function for PRKCQ-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PRKCQ-AS1 Gene

Localization for PRKCQ-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for PRKCQ-AS1 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PRKCQ-AS1 Gene

Pathways & Interactions for PRKCQ-AS1 Gene

PathCards logo

SuperPathways for PRKCQ-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for PRKCQ-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PRKCQ-AS1 Gene

Drugs & Compounds for PRKCQ-AS1 Gene

No Compound Related Data Available

Transcripts for PRKCQ-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for PRKCQ-AS1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00009B1DDD_9606 lncRNA 1141 4

Ensembl: ENST00000624974 (view in UCSC) ,

LncBook: HSALNT0158423,

LNCipedia: PRKCQ-AS1:22,

NONCODE: NONHSAT155035.1,

URS0000423A43_9606 lncRNA 938 4

Ensembl: ENST00000609346 (view in UCSC) ,

LncBook: HSALNT0158437,

LNCipedia: PRKCQ-AS1:31,

NONCODE: NONHSAT155042.1,

URS00009BA429_9606 lncRNA 905 4

Ensembl: ENST00000625102 (view in UCSC) ,

LncBook: HSALNT0158417,

LNCipedia: PRKCQ-AS1:20,

NONCODE: NONHSAT155034.1,

URS00009C113E_9606 lncRNA 883 4

Ensembl: ENST00000613985 (view in UCSC) ,

LncBook: HSALNT0158410,

LNCipedia: PRKCQ-AS1:17,

NONCODE: NONHSAT155033.1,

URS00009B8313_9606 lncRNA 811 4

Ensembl: ENST00000623160 (view in UCSC) ,

LncBook: HSALNT0158421,

LNCipedia: PRKCQ-AS1:23,

NONCODE: NONHSAT155036.1,

PRKCQ-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for PRKCQ-AS1 Gene

4 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for PRKCQ-AS1 Gene

No ASD Table

Relevant External Links for PRKCQ-AS1 Gene

GeneLoc Exon Structure for
PRKCQ-AS1

Expression for PRKCQ-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for PRKCQ-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for PRKCQ-AS1 Gene

This gene is overexpressed in Muscle - Skeletal (x9.1) and Whole Blood (x4.3).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for PRKCQ-AS1

SOURCE GeneReport for Unigene cluster for PRKCQ-AS1 Gene:

Hs.13262
genes like me logo Genes that share expression patterns with PRKCQ-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PRKCQ-AS1 Gene

Orthologs for PRKCQ-AS1 Gene

Evolution for PRKCQ-AS1 Gene

ENSEMBL:
Gene Tree for PRKCQ-AS1 (if available)
TreeFam:
Gene Tree for PRKCQ-AS1 (if available)
Alliance of Genome Resources:
Additional Orthologs for PRKCQ-AS1

No data available for Orthologs for PRKCQ-AS1 Gene

Paralogs for PRKCQ-AS1 Gene

No data available for Paralogs for PRKCQ-AS1 Gene

Variants for PRKCQ-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for PRKCQ-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for PRKCQ-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1047309 CNV gain 25217958
nsv549912 CNV gain 21841781
nsv5698 CNV insertion 18451855
nsv7198 OTHER inversion 18451855

Additional Variant Information for PRKCQ-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PRKCQ-AS1
Leiden Open Variation Database (LOVD)
PRKCQ-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for PRKCQ-AS1 Gene

Disorders for PRKCQ-AS1 Gene

Additional Disease Information for PRKCQ-AS1

No disorders were found for PRKCQ-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PRKCQ-AS1 Gene

Publications for PRKCQ-AS1 Gene

  1. Expression Signatures of Long Noncoding RNAs in Adolescent Idiopathic Scoliosis. (PMID: 26421281) Liu XY … Wang YP (BioMed research international 2015) 2 3
  2. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3
  3. Large-scale concatenation cDNA sequencing. (PMID: 9110174) Yu W … Gibbs RA (Genome research 1997) 3
  4. A "double adaptor" method for improved shotgun library construction. (PMID: 8619474) Andersson B … Gibbs RA (Analytical biochemistry 1996) 3

Products for PRKCQ-AS1 Gene

Sources for PRKCQ-AS1 Gene