Aliases for PRKCA-AS1 Gene

Subcategory (RNA class) for PRKCA-AS1 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for PRKCA-AS1 Gene

  • PRKCA Antisense RNA 1 2 3 5
  • PRKCA-AS1 2 170
  • NONHSAG022546 94
  • HSALNG0118244 169

External Ids for PRKCA-AS1 Gene

Summaries for PRKCA-AS1 Gene

GeneCards Summary for PRKCA-AS1 Gene

PRKCA-AS1 (PRKCA Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for PRKCA-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PRKCA-AS1 Gene

Genomics for PRKCA-AS1 Gene

GeneHancer (GH) Regulatory Elements for PRKCA-AS1 Gene

Promoters and enhancers for PRKCA-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PRKCA-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PRKCA-AS1 Gene

Genomic Locations for PRKCA-AS1 Gene
chr17:66,398,069-66,416,854
(GRCh38/hg38)
Size:
18,786 bases
Orientation:
Minus strand
chr17:64,394,187-64,412,972
(GRCh37/hg19)
Size:
18,786 bases
Orientation:
Minus strand

Genomic View for PRKCA-AS1 Gene

Genes around PRKCA-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PRKCA-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PRKCA-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PRKCA-AS1 Gene

Proteins for PRKCA-AS1 Gene

Post-translational modifications for PRKCA-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PRKCA-AS1 Gene

Domains & Families for PRKCA-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PRKCA-AS1 Gene

Function for PRKCA-AS1 Gene

Phenotypes From GWAS Catalog for PRKCA-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PRKCA-AS1 Gene

Localization for PRKCA-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PRKCA-AS1 Gene

Pathways & Interactions for PRKCA-AS1 Gene

PathCards logo

SuperPathways for PRKCA-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for PRKCA-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PRKCA-AS1 Gene

Drugs & Compounds for PRKCA-AS1 Gene

No Compound Related Data Available

Transcripts for PRKCA-AS1 Gene

mRNA/cDNA for PRKCA-AS1 Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) NONCODE transcripts :
(5) RNACentral transcripts :
(1) LncBook transcripts :
(4) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for PRKCA-AS1 Gene

No ASD Table

Relevant External Links for PRKCA-AS1 Gene

GeneLoc Exon Structure for
PRKCA-AS1
ECgene alternative splicing isoforms for
PRKCA-AS1

Expression for PRKCA-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for PRKCA-AS1 Gene

genes like me logo Genes that share expression patterns with PRKCA-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PRKCA-AS1 Gene

Orthologs for PRKCA-AS1 Gene

Evolution for PRKCA-AS1 Gene

ENSEMBL:
Gene Tree for PRKCA-AS1 (if available)
TreeFam:
Gene Tree for PRKCA-AS1 (if available)

No data available for Orthologs for PRKCA-AS1 Gene

Paralogs for PRKCA-AS1 Gene

No data available for Paralogs for PRKCA-AS1 Gene

Variants for PRKCA-AS1 Gene

Sequence variations from dbSNP and Humsavar for PRKCA-AS1 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000000168 -- 66,417,420(-) T/C upstream_transcript_variant
rs1000059253 -- 66,411,668(-) G/A intron_variant
rs1000243213 -- 66,406,093(-) A/G intron_variant
rs1000333567 -- 66,417,100(-) A/G upstream_transcript_variant
rs1000395637 -- 66,409,353(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for PRKCA-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv5750n54 CNV loss 21841781
esv3582875 CNV loss 25503493
esv3582876 CNV loss 25503493
nsv1064970 CNV loss 25217958
nsv1120054 OTHER inversion 24896259
nsv457881 CNV loss 19166990
nsv457882 CNV loss 19166990
nsv457887 CNV loss 19166990
nsv470597 CNV loss 18288195
nsv575894 CNV loss 21841781
nsv575895 CNV loss 21841781
nsv575896 CNV loss 21841781
nsv833520 CNV gain 17160897

Additional Variant Information for PRKCA-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PRKCA-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for PRKCA-AS1 Gene

Disorders for PRKCA-AS1 Gene

Additional Disease Information for PRKCA-AS1

No disorders were found for PRKCA-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PRKCA-AS1 Gene

Publications for PRKCA-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56
  2. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3 56

Products for PRKCA-AS1 Gene

Sources for PRKCA-AS1 Gene