Aliases for PRG1 Gene

Subcategory (RNA class) for PRG1 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for PRG1 Gene

  • P53-Responsive Gene 1 3
  • CDNA, FLJ94872, Homo Sapiens Immediate Early Response 3 (IER3), Transcript Variantshort, MRNA 13
  • Radiation-Inducible Immediate Early Response Gene IEX1 13
  • Proteoglycan 1, Secretory Granule, Isoform CRA_a 13
  • Immediate Early Response 3, Isoform CRA_a 13
  • Immediate Early Response 3 13
  • NONHSAG025933.2 91
  • PRG1 Protein 13
  • Lnc-CD177-2 165
  • IER3 13
  • IEX1 13

External Ids for PRG1 Gene

Previous GeneCards Identifiers for PRG1 Gene

  • GC10P069659
  • GC10P069934
  • GC10P070740
  • GC10P070192
  • GC10P070171
  • GC10P070517
  • GC19U900736
  • GC19P043853

Summaries for PRG1 Gene

GeneCards Summary for PRG1 Gene

PRG1 (P53-Responsive Gene 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for PRG1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PRG1 Gene

Genomics for PRG1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for PRG1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J043352 Enhancer 0.5 FANTOM5 0.7 +3.3 3269 0.4 FOXA1 ZNF112 GATA3 GLIS1 ZSCAN21 CD177 ENSG00000270679 ZNF283 ENSG00000267191 ZNF221 ENSG00000266921 ZNF576 ZNF223 ZNF225 PRG1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PRG1 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the PRG1 gene promoter:
  • AREB6
  • CP2
  • NF-kappaB1
  • NRSF form 1
  • NRSF form 2
  • Pax-4a
  • STAT3

Genomic Locations for PRG1 Gene

Genomic Locations for PRG1 Gene
chr19:43,349,056-43,349,548
(GRCh38/hg38)
Size:
493 bases
Orientation:
Plus strand
chr19:43,853,208-43,853,700
(GRCh37/hg19)
Size:
493 bases
Orientation:
Plus strand

Genomic View for PRG1 Gene

Genes around PRG1 on UCSC Golden Path with GeneCards custom track
PRG1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
PRG1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PRG1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PRG1 Gene

Proteins for PRG1 Gene

  • Protein details for PRG1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    Q5ST77-Q5ST77_HUMAN
    Recommended name:
    IER3
    Protein Accession:
    Q5ST77

    Protein attributes for PRG1 Gene

    Size:
    156 amino acids
    Molecular mass:
    16929 Da
    Quaternary structure:
    No Data Available
  • Protein details for PRG1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    Q0EFC0-Q0EFC0_HUMAN
    Recommended name:
    PRG1 protein
    Protein Accession:
    Q0EFC0

    Protein attributes for PRG1 Gene

    Size:
    156 amino acids
    Molecular mass:
    16590 Da
    Quaternary structure:
    No Data Available
  • Protein details for PRG1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A024QZL1-A0A024QZL1_HUMAN
    Recommended name:
    Proteoglycan 1, secretory granule, isoform CRA_a
    Protein Accession:
    A0A024QZL1

    Protein attributes for PRG1 Gene

    Size:
    158 amino acids
    Molecular mass:
    17624 Da
    Quaternary structure:
    No Data Available

neXtProt entry for PRG1 Gene

Post-translational modifications for PRG1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PRG1 Gene

Domains & Families for PRG1 Gene

Protein Domains for PRG1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for PRG1 Gene

GenScript: Design optimal peptide antigens:
  • PRG1 protein (Q0EFC0_HUMAN)
genes like me logo Genes that share domains with PRG1: view

No data available for Gene Families , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PRG1 Gene

Function for PRG1 Gene

Molecular function for PRG1 Gene

GENATLAS Biochemistry:
platelet proteoglycan,core of secretory granule,17.6kDa

No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for PRG1 Gene

Localization for PRG1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PRG1 Gene

Pathways & Interactions for PRG1 Gene

PathCards logo

SuperPathways for PRG1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for PRG1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PRG1 Gene

Drugs & Compounds for PRG1 Gene

No Compound Related Data Available

Transcripts for PRG1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for PRG1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075DD7F_9606 lncRNA 493 3

RefSeq: NR_026881,

LNCipedia: lnc-CD177-2:1,

NONCODE: NONHSAT066596.2,

PRG1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for PRG1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for PRG1 Gene

No ASD Table

Relevant External Links for PRG1 Gene

GeneLoc Exon Structure for
PRG1

Expression for PRG1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for PRG1

SOURCE GeneReport for Unigene cluster for PRG1 Gene:

Hs.721578
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PRG1 Gene

Orthologs for PRG1 Gene

No data available for Orthologs and Evolution for PRG1 Gene

Paralogs for PRG1 Gene

(2) SIMAP similar genes for PRG1 Gene using alignment to 2 proteins:

  • Q0EFC0_HUMAN
  • Q5ST77_HUMAN
genes like me logo Genes that share paralogs with PRG1: view

No data available for Paralogs for PRG1 Gene

Variants for PRG1 Gene

Additional dbSNP identifiers (rs#s) for PRG1 Gene

Structural Variations from Database of Genomic Variants (DGV) for PRG1 Gene

Variant ID Type Subtype PubMed ID
dgv3591n100 CNV loss 25217958
dgv3603n100 CNV gain 25217958
dgv6497n54 CNV loss 21841781
dgv6502n54 CNV loss 21841781
esv2751795 CNV loss 17911159
esv2758763 CNV gain+loss 17122850
esv3644464 CNV loss 21293372
nsv1056633 CNV loss 25217958
nsv1057657 CNV gain 25217958
nsv1057682 CNV loss 25217958
nsv2500 CNV insertion 18451855
nsv469666 CNV loss 16826518
nsv469787 CNV loss 16826518
nsv516973 CNV gain+loss 19592680
nsv526966 CNV loss 19592680

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for PRG1 Gene

Disorders for PRG1 Gene

Additional Disease Information for PRG1

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)

No disorders were found for PRG1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PRG1 Gene

Publications for PRG1 Gene

  1. Rapid evolution of major histocompatibility complex class I genes in primates generates new disease alleles in humans via hitchhiking diversity. (PMID: 16702430) Shiina T … Bahram S (Genetics 2006) 13
  2. A scan of chromosome 10 identifies a novel locus showing strong association with late-onset Alzheimer disease. (PMID: 16385451) Grupe A … Goate A (American journal of human genetics 2006) 41
  3. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 13
  4. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2000) 3
  5. Isolation of differentially expressed cDNAs from p53-dependent apoptotic cells: activation of the human homologue of the Drosophila peroxidasin gene. (PMID: 10441517) Horikoshi N … Shenk T (Biochemical and biophysical research communications 1999) 3

No data available for Mastermind for PRG1 Gene

Products for PRG1 Gene

Sources for PRG1 Gene