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Aliases for PRDM16-DT Gene
Subcategory (RNA class) for PRDM16-DT Gene
lncRNA
Number of RNA Genes sources:
4 / 17
Aliases for PRDM16-DT Gene
External Ids for PRDM16-DT Gene
- HGNC: 48664
- Entrez Gene: 440556
- Ensembl: ENSG00000177133
Previous HGNC Symbols for PRDM16-DT Gene
- LINC00982
Summaries for PRDM16-DT Gene
GeneCards Summary for PRDM16-DT Gene
PRDM16-DT (PRDM16 Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with PRDM16-DT include Gastric Adenocarcinoma and Gastric Cancer.
Additional gene information for PRDM16-DT Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PRDM16-DT Gene
Genomics for PRDM16-DT Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for PRDM16-DT Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH01J003065 | Promoter/Enhancer | 2.2 | EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER | 600.7 | +0.4 | 368 | 9.4 | HNRNPL GATAD2A CTCF ZNF692 PRDM1 ZIC2 ZSCAN4 RBFOX2 POLR2A PATZ1 | PRDM16 LOC100420339 PRDM16-DT ACTRT2 ARHGEF16 | |
| GH01J003063 | Promoter/Enhancer | 0.6 | EPDnew dbSUPER | 600.4 | +8.3 | 8287 | 0.1 | EZH2 | PRDM16-DT PRDM16 ACTRT2 | |
| GH01J003062 | Promoter/Enhancer | 0.6 | EPDnew dbSUPER | 600.4 | +8.4 | 8439 | 0.1 | EZH2 | PRDM16-DT PRDM16 ACTRT2 | |
| GH01J003274 | Enhancer | 0.8 | VISTA UCNEbase dbSUPER | 11.6 | -203.6 | -203570 | 0.8 | piR-59218 ACTRT2 PRDM16 PRDM16-DT AB372781-001 ARHGEF16 | ||
| GH01J003093 | Enhancer | 0.5 | Ensembl dbSUPER | 12.7 | -23.3 | -23330 | 2 | ZIC2 SPI1 | PRDM16-DT PRDM16 HES5 MIR4251 ARHGEF16 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around PRDM16-DT on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for PRDM16-DT Gene
Genomic Locations for PRDM16-DT Gene
- chr1:3,055,439-3,070,871
- (GRCh38/hg38)
- Size:
- 15,433 bases
- Orientation:
- Minus strand
- chr1:2,976,179-2,985,001
- (GRCh37/hg19)
- Size:
- 8,823 bases
- Orientation:
- Minus strand
Genomic View for PRDM16-DT Gene
Genes around PRDM16-DT on UCSC Golden Path with GeneCards custom track
PRDM16-DT in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 1p36.32 by HGNC
- 1p36.32 by Entrez Gene
- 1p36.32 by Ensembl
PRDM16-DT Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for PRDM16-DT Gene
Proteins for PRDM16-DT Gene
Post-translational modifications for PRDM16-DT Gene
No Post-translational modifications
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for PRDM16-DT
- Origene Custom Protein Services for PRDM16-DT
- Novus Biologicals proteins for PRDM16-DT
No data available for DME Specific Peptides for PRDM16-DT Gene
Domains & Families for PRDM16-DT Gene
Gene Families for PRDM16-DT Gene
- HGNC:
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PRDM16-DT Gene
Function for PRDM16-DT Gene
Phenotypes From GWAS Catalog for PRDM16-DT Gene
Phenotypes for PRDM16-DT Gene
- GenomeRNAi human phenotypes for PRDM16-DT:
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for PRDM16-DT - Select products 50% OFF >
- * PRDM16-DT CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
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miRNA Products
Inhibitory RNA Products
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Clone Products
- Applied Biological Materials (abm): Clones for PRDM16-DT - Select products 50% OFF >
- * PRDM16-DT as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PRDM16-DT Gene
Localization for PRDM16-DT Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PRDM16-DT Gene
Transcripts for PRDM16-DT Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for PRDM16-DT Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS0000612A6E_9606 | lncRNA | 1697 | 4 |
Ensembl: ENST00000453118 (view in UCSC) , LncBook: HSALNT0000683, LNCipedia: LINC00982:11, NONCODE: NONHSAT000494.2, |
| URS00003CE162_9606 | lncRNA | 561 | 4 |
Ensembl: ENST00000413472 (view in UCSC) , LncBook: HSALNT0000684, LNCipedia: LINC00982:12, NONCODE: NONHSAT000497.2, |
| URS0000306668_9606 | lncRNA | 280 | 4 |
Ensembl: ENST00000415573 (view in UCSC) , LncBook: HSALNT0000688, LNCipedia: LINC00982:7, NONCODE: NONHSAT000500.2, |
| URS00002ABBEE_9606 | lncRNA | 4247 | 3 |
Ensembl: ENST00000445317 (view in UCSC) , LNCipedia: LINC00982:1, NONCODE: NONHSAT000496.2, |
| URS00004C8B2C_9606 | lncRNA | 2917 | 3 |
Ensembl: ENST00000606861 (view in UCSC) , LNCipedia: LINC00982:8, NONCODE: NONHSAT151001.1, |
PRDM16-DT in the GeneCards ncRNA compendium hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for PRDM16-DT Gene
- 2 REFSEQ mRNAs :
- 6 NCBI additional mRNA sequence :
- 1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000420957 435 nts (view in UCSC)
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for PRDM16-DT - Select products 50% OFF >
- * PRDM16-DT CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Browse CRISPR knockouts for PRDM16-DT
miRNA Products
Inhibitory RNA Products
- Origene shrna and RNAi products in human, mouse, rat for PRDM16-DT
- Browse OriGene Inhibitory RNA Products For PRDM16-DT
Clone Products
- Applied Biological Materials (abm): Clones for PRDM16-DT - Select products 50% OFF >
- * PRDM16-DT as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
Relevant External Links for PRDM16-DT Gene
- GeneLoc Exon Structure for
- PRDM16-DT
Expression for PRDM16-DT Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for PRDM16-DT
No Expression Related Data Available
Primer Products
-
OriGene qPCR primer pairs for PRDM16-DT
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PRDM16-DT Gene
Orthologs for PRDM16-DT Gene
No data available for Orthologs for PRDM16-DT Gene
Paralogs for PRDM16-DT Gene
No data available for Paralogs for PRDM16-DT Gene
Variants for PRDM16-DT Gene
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv11n100 | CNV | gain | 25217958 |
| esv3583359 | CNV | gain | 25503493 |
| esv3585036 | CNV | gain | 21293372 |
| esv3585037 | CNV | gain | 21293372 |
| nsv1000306 | CNV | gain | 25217958 |
| nsv1013792 | CNV | gain | 25217958 |
| nsv428399 | CNV | gain | 18775914 |
| nsv470686 | CNV | loss | 18288195 |
| nsv545098 | CNV | loss | 21841781 |
| nsv824697 | CNV | gain | 20364138 |
| nsv829759 | CNV | loss | 17160897 |
| nsv951959 | CNV | deletion | 24416366 |
Additional Variant Information for PRDM16-DT Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- PRDM16-DT
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for PRDM16-DT Gene
Disorders for PRDM16-DT Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| gastric adenocarcinoma |
|
|
| gastric cancer |
|
|
| hypoplastic right heart syndrome |
|
|
Search PRDM16-DT in MalaCards
View complete list of genes associated with diseases
Additional Disease Information for PRDM16-DT
No data available for UniProtKB/Swiss-Prot and Genatlas for PRDM16-DT Gene
Publications for PRDM16-DT Gene
- De novo reconstruction of human adipose transcriptome reveals conserved lncRNAs as regulators of brown adipogenesis. (PMID: 29626186) Ding C … Sun L (Nature communications 2018) 2 3
- Upregulated expression of long non-coding RNA LINC00982 regulates cell proliferation and its clinical relevance in patients with gastric cancer. (PMID: 26334618) Fei ZH … Xie CY (Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine 2016) 2 3
- Analysis of long non-coding RNA expression profiles in gastric cancer. (PMID: 23801869) Cao WJ … Zhang ZY (World journal of gastroenterology 2013) 2 3
- Low expression of LINC00982 and PRDM16 is associated with altered gene expression, damaged pathways and poor survival in lung adenocarcinoma. (PMID: 30132554) Lv W … Qian B (Oncology reports 2018) 3
- Interactions of pathological hallmark proteins: tubulin polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PMID: 21832049) Oláh J … Ovádi J (The Journal of biological chemistry 2011) 3
Products for PRDM16-DT Gene
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- Custom Antibody Services
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- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for PRDM16-DT
- Origene Custom Protein Services for PRDM16-DT
- Origene shrna and RNAi products in human, mouse, rat for PRDM16-DT
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- OriGene qPCR primer pairs for PRDM16-DT
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- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
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- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
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- Novus Biologicals proteins for PRDM16-DT
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- VectorBuilder Custom and pre-made DNA vectors for PRDM16-DT (ie. gene expression, shRNA knockdown, CRISPR)
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- antibodies-online: Search results for available Uncharacterized LOC440556 related products ranked by validation data
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Sources for PRDM16-DT Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB