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PRDM16-DT (PRDM16 Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with PRDM16-DT include Gastric Adenocarcinoma and Gastric Cancer.
GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
---|---|---|---|---|---|---|---|---|---|---|
GH01J003065 | Promoter/Enhancer | 2.2 | EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER | 600.7 | +0.4 | 368 | 9.4 | HNRNPL GATAD2A CTCF ZNF692 PRDM1 ZIC2 ZSCAN4 RBFOX2 POLR2A PATZ1 | PRDM16 LOC100420339 PRDM16-DT ACTRT2 ARHGEF16 | |
GH01J003063 | Promoter/Enhancer | 0.6 | EPDnew dbSUPER | 600.4 | +8.3 | 8287 | 0.1 | EZH2 | PRDM16-DT PRDM16 ACTRT2 | |
GH01J003062 | Promoter/Enhancer | 0.6 | EPDnew dbSUPER | 600.4 | +8.4 | 8439 | 0.1 | EZH2 | PRDM16-DT PRDM16 ACTRT2 | |
GH01J003274 | Enhancer | 0.8 | VISTA UCNEbase dbSUPER | 11.6 | -203.6 | -203570 | 0.8 | piR-59218 ACTRT2 PRDM16 PRDM16-DT AB372781-001 ARHGEF16 | ||
GH01J003093 | Enhancer | 0.5 | Ensembl dbSUPER | 12.7 | -23.3 | -23330 | 2 | ZIC2 SPI1 | PRDM16-DT PRDM16 HES5 MIR4251 ARHGEF16 |
RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
---|---|---|---|---|
URS0000612A6E_9606 | lncRNA | 1697 | 4 |
Ensembl: ENST00000453118 (view in UCSC) , LncBook: HSALNT0000683, LNCipedia: LINC00982:11, NONCODE: NONHSAT000494.2, |
URS00003CE162_9606 | lncRNA | 561 | 4 |
Ensembl: ENST00000413472 (view in UCSC) , LncBook: HSALNT0000684, LNCipedia: LINC00982:12, NONCODE: NONHSAT000497.2, |
URS0000306668_9606 | lncRNA | 280 | 4 |
Ensembl: ENST00000415573 (view in UCSC) , LncBook: HSALNT0000688, LNCipedia: LINC00982:7, NONCODE: NONHSAT000500.2, |
URS00002ABBEE_9606 | lncRNA | 4247 | 3 |
Ensembl: ENST00000445317 (view in UCSC) , LNCipedia: LINC00982:1, NONCODE: NONHSAT000496.2, |
URS00004C8B2C_9606 | lncRNA | 2917 | 3 |
Ensembl: ENST00000606861 (view in UCSC) , LNCipedia: LINC00982:8, NONCODE: NONHSAT151001.1, |
Variant ID | Type | Subtype | PubMed ID |
---|---|---|---|
dgv11n100 | CNV | gain | 25217958 |
esv3583359 | CNV | gain | 25503493 |
esv3585036 | CNV | gain | 21293372 |
esv3585037 | CNV | gain | 21293372 |
nsv1000306 | CNV | gain | 25217958 |
nsv1013792 | CNV | gain | 25217958 |
nsv428399 | CNV | gain | 18775914 |
nsv470686 | CNV | loss | 18288195 |
nsv545098 | CNV | loss | 21841781 |
nsv824697 | CNV | gain | 20364138 |
nsv829759 | CNV | loss | 17160897 |
nsv951959 | CNV | deletion | 24416366 |
Disorder | Aliases | PubMed IDs |
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gastric adenocarcinoma |
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gastric cancer |
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hypoplastic right heart syndrome |
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