Aliases for PRANCR Gene

Subcategory (RNA class) for PRANCR Gene

lncRNA

Number of RNA Genes sources:

4 / 17

Aliases for PRANCR Gene

  • Progenitor Renewal Associated Non-Coding RNA 2 3 5
  • Long Intergenic Non-Protein Coding RNA 1481 2 3
  • CNOT2 Divergent Transcript 2 3
  • LINC01481 3 165
  • PRANCR 2 5
  • NONHSAG011652.2 91
  • NONHSAG011658.2 91
  • HSALNG0092289 164
  • CNOT2-DT 3

External Ids for PRANCR Gene

Previous HGNC Symbols for PRANCR Gene

  • LINC01481
  • CNOT2-DT

Summaries for PRANCR Gene

GeneCards Summary for PRANCR Gene

PRANCR (Progenitor Renewal Associated Non-Coding RNA) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for PRANCR Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PRANCR Gene

Genomics for PRANCR Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for PRANCR Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PRANCR on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for PRANCR Gene

Genomic Locations for PRANCR Gene
chr12:69,901,918-70,244,190
(GRCh38/hg38)
Size:
342,273 bases
Orientation:
Minus strand

Genomic View for PRANCR Gene

Genes around PRANCR on UCSC Golden Path with GeneCards custom track
PRANCR in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
PRANCR Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PRANCR Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PRANCR Gene

Proteins for PRANCR Gene

Post-translational modifications for PRANCR Gene

No Post-translational modifications

No data available for DME Specific Peptides for PRANCR Gene

Domains & Families for PRANCR Gene

Gene Families for PRANCR Gene

genes like me logo Genes that share domains with PRANCR: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PRANCR Gene

Function for PRANCR Gene

Phenotypes From GWAS Catalog for PRANCR Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PRANCR Gene

Localization for PRANCR Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PRANCR Gene

Pathways & Interactions for PRANCR Gene

PathCards logo

SuperPathways for PRANCR Gene

No Data Available

Gene Ontology (GO) - Biological Process for PRANCR Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PRANCR Gene

Drugs & Compounds for PRANCR Gene

No Compound Related Data Available

Transcripts for PRANCR Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for PRANCR Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075BF57_9606 lncRNA 536 5

HGNC: 51126,

RefSeq: NR_120460,

LncBook: HSALNT0191200,

LNCipedia: LINC01481:16,

NONCODE: NONHSAT163724.1,

URS00003DF95E_9606 lncRNA 883 4

Ensembl: ENST00000549651 (view in UCSC) ,

LncBook: HSALNT0191213,

LNCipedia: LINC01481:15,

NONCODE: NONHSAT029397.2,

URS00000A3946_9606 lncRNA 494 4

Ensembl: ENST00000550216 (view in UCSC) ,

LncBook: HSALNT0191204,

LNCipedia: LINC01481:21,

NONCODE: NONHSAT029394.2,

URS000075CAA4_9606 lncRNA 505 3

RefSeq: NR_120461,

LncBook: HSALNT0191203,

LNCipedia: LINC01481:17,

URS00001988AB_9606 lncRNA 452 3

Ensembl: ENST00000553135 (view in UCSC) ,

LncBook: HSALNT0191217,

LNCipedia: LINC01481:20,

PRANCR in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for PRANCR Gene

7 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for PRANCR Gene

No ASD Table

Relevant External Links for PRANCR Gene

GeneLoc Exon Structure for
PRANCR

Expression for PRANCR Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PRANCR Gene

Orthologs for PRANCR Gene

Evolution for PRANCR Gene

ENSEMBL:
Gene Tree for PRANCR (if available)
TreeFam:
Gene Tree for PRANCR (if available)

No data available for Orthologs for PRANCR Gene

Paralogs for PRANCR Gene

No data available for Paralogs for PRANCR Gene

Variants for PRANCR Gene

Additional dbSNP identifiers (rs#s) for PRANCR Gene

Structural Variations from Database of Genomic Variants (DGV) for PRANCR Gene

Variant ID Type Subtype PubMed ID
esv3629882 CNV loss 21293372
esv3629883 CNV loss 21293372
esv3629884 CNV gain 21293372
nsv559237 CNV loss 21841781
nsv763 CNV deletion 18451855

Additional Variant Information for PRANCR Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PRANCR

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for PRANCR Gene

Disorders for PRANCR Gene

Additional Disease Information for PRANCR

No disorders were found for PRANCR Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PRANCR Gene

Publications for PRANCR Gene

  1. A genome-wide long noncoding RNA CRISPRi screen identifies PRANCR as a novel regulator of epidermal homeostasis. (PMID: 31804951) Cai P … Sun BK (Genome research 2020) 2 3
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

Products for PRANCR Gene

Sources for PRANCR Gene