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Aliases for PPP4R1-AS1 Gene

Subcategory (RNA class) for PPP4R1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for PPP4R1-AS1 Gene

  • PPP4R1 Antisense RNA 1 2 3 5

External Ids for PPP4R1-AS1 Gene

Summaries for PPP4R1-AS1 Gene

GeneCards Summary for PPP4R1-AS1 Gene

PPP4R1-AS1 (PPP4R1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for PPP4R1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PPP4R1-AS1 Gene

Genomics for PPP4R1-AS1 Gene

GeneHancer (GH) Regulatory Elements for PPP4R1-AS1 Gene

Promoters and enhancers for PPP4R1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J009612 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 628.9 0.0 -4 5.3 ZFX CTCF CBFA2T2 ZNF148 MLLT1 CEBPG GTF2F1 AHR BACH1 MAFK PPP4R1-AS1 PPP4R1 RALBP1 ENSG00000266541 GC18M009550
GH18J009618 Promoter/Enhancer 1.1 Ensembl ENCODE 29.1 +4.7 4710 1.4 CEBPG ZNF512 CEBPA PHF21A RUNX3 HDAC2 FOS JUN KDM1A IKZF1 GC18M009617 RNU6-903P PPP4R1-AS1 LINC02856 GC18M009550
GH18J009608 Enhancer 1.4 Ensembl ENCODE dbSUPER 19.6 -5.6 -5606 2.8 ELF3 CBFA2T2 MLLT1 RERE TFE3 TRIM24 SP1 HNF1A PRDM1 ZNF384 PPP4R1-AS1 TXNDC2 PPP4R1 ENSG00000266541 GC18M009550
GH18J009593 Enhancer 0.9 Ensembl ENCODE dbSUPER 18.8 -19.1 -19077 3.5 IKZF2 BCLAF1 JUNB BATF EBF1 ETV6 PPP4R1-AS1 PPP4R1 RNU6-903P RALBP1 ENSG00000273335 ENSG00000266541 GC18M009550
GH18J009631 Enhancer 0.9 Ensembl ENCODE 15.1 +17.0 16994 2.4 MAFK CREB1 ZNF512 BRCA1 CEBPB JUN SP1 RCOR1 JUND NFYB PPP4R1-AS1 TWSG1 GC18M009617 LINC02856 RNU6-903P GC18M009550
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PPP4R1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PPP4R1-AS1 Gene

Genomic Locations for PPP4R1-AS1 Gene
chr18:9,614,807-9,619,363
(GRCh38/hg38)
Size:
4,557 bases
Orientation:
Plus strand
chr18:9,615,262-9,619,361
(GRCh37/hg19)
Size:
4,100 bases
Orientation:
Plus strand

Genomic View for PPP4R1-AS1 Gene

Genes around PPP4R1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PPP4R1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PPP4R1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PPP4R1-AS1 Gene

Proteins for PPP4R1-AS1 Gene

Post-translational modifications for PPP4R1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PPP4R1-AS1 Gene

Domains & Families for PPP4R1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PPP4R1-AS1 Gene

Function for PPP4R1-AS1 Gene

Phenotypes From GWAS Catalog for PPP4R1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PPP4R1-AS1 Gene

Localization for PPP4R1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PPP4R1-AS1 Gene

Pathways & Interactions for PPP4R1-AS1 Gene

PathCards logo

SuperPathways for PPP4R1-AS1 Gene

No Data Available

Interacting Proteins for PPP4R1-AS1 Gene

Gene Ontology (GO) - Biological Process for PPP4R1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PPP4R1-AS1 Gene

Drugs & Compounds for PPP4R1-AS1 Gene

No Compound Related Data Available

Transcripts for PPP4R1-AS1 Gene

mRNA/cDNA for PPP4R1-AS1 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for PPP4R1-AS1 Gene

No ASD Table

Relevant External Links for PPP4R1-AS1 Gene

GeneLoc Exon Structure for
PPP4R1-AS1
ECgene alternative splicing isoforms for
PPP4R1-AS1

Expression for PPP4R1-AS1 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PPP4R1-AS1 Gene

Orthologs for PPP4R1-AS1 Gene

Evolution for PPP4R1-AS1 Gene

ENSEMBL:
Gene Tree for PPP4R1-AS1 (if available)
TreeFam:
Gene Tree for PPP4R1-AS1 (if available)

No data available for Orthologs for PPP4R1-AS1 Gene

Paralogs for PPP4R1-AS1 Gene

No data available for Paralogs for PPP4R1-AS1 Gene

Variants for PPP4R1-AS1 Gene

Sequence variations from dbSNP and Humsavar for PPP4R1-AS1 Gene

SNP ID Clin Chr 18 pos Variation AA Info Type
rs1000986954 -- 9,615,487(+) C/G intron_variant
rs1001257923 -- 9,619,095(+) A/G intron_variant
rs1001391074 -- 9,618,790(+) A/C intron_variant
rs1001640940 -- 9,618,009(+) A/G intron_variant
rs1001671991 -- 9,618,266(+) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for PPP4R1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv29650 CNV loss 19812545
nsv1072774 CNV deletion 25765185
nsv1118782 CNV deletion 24896259
nsv458024 CNV gain 19166990
nsv521175 CNV loss 19592680
nsv576448 CNV gain 21841781

Additional Variant Information for PPP4R1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PPP4R1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for PPP4R1-AS1 Gene

Disorders for PPP4R1-AS1 Gene

Additional Disease Information for PPP4R1-AS1

No disorders were found for PPP4R1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PPP4R1-AS1 Gene

Publications for PPP4R1-AS1 Gene

No publications were found for PPP4R1-AS1 Gene.

No data available for External Links for PPP4R1-AS1 Gene

Products for PPP4R1-AS1 Gene

Sources for PPP4R1-AS1 Gene

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