Aliases for PPP1R12A-AS1 Gene

Subcategory (RNA class) for PPP1R12A-AS1 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for PPP1R12A-AS1 Gene

  • PPP1R12A Antisense RNA 1 2 3 5
  • HSALNG0092662 169
  • NONHSAG011790 94
  • PPP1R12A-AS1 2
  • Lnc-OTOGL-1 170
  • R12A-AS1 3

External Ids for PPP1R12A-AS1 Gene

Summaries for PPP1R12A-AS1 Gene

GeneCards Summary for PPP1R12A-AS1 Gene

PPP1R12A-AS1 (PPP1R12A Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for PPP1R12A-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PPP1R12A-AS1 Gene

Genomics for PPP1R12A-AS1 Gene

GeneHancer (GH) Regulatory Elements for PPP1R12A-AS1 Gene

Promoters and enhancers for PPP1R12A-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J079931 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 750.6 -0.7 -676 6 SIN3A ZBTB40 CTCF ZBTB6 SMARCE1 POLR2A MYC NFYC ELF1 L3MBTL2 PPP1R12A PPP1R12A-AS1 lnc-OTOGL-1 NOP56P3 RPL7P38 RF00994-252
GH12J079926 Enhancer 0.7 ENCODE 0.4 -6.9 -6895 2.4 MLLT1 ZNF687 BACH1 TRIM22 ZNF143 PKNOX1 ZNF316 POLR2A NFE2 ZSCAN5C PPP1R12A RPL7P38 PPP1R12A-AS1 RF00994-252
GH12J079919 Promoter 0.6 Ensembl 0.4 -14.8 -14799 0.6 MAFK ZNF316 SCRT2 ZNF146 GLIS1 PPP1R12A-AS1 PPP1R12A RF00994-252
GH12J079920 Promoter 0.6 Ensembl 0.4 -13.7 -13699 0.8 MAFK ZNF316 TRIM22 SCRT2 PPP1R12A PPP1R12A-AS1 RF00994-252
GH12J079887 Enhancer 0.5 ENCODE 0.2 -47.8 -47794 0.1 ZNF24 CTCF RAD21 REST TRIM22 SMC3 ZNF26 PPP1R12A PAWR RPL7P38 RF00994-252 PPP1R12A-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PPP1R12A-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PPP1R12A-AS1 Gene

Genomic Locations for PPP1R12A-AS1 Gene
chr12:79,934,900-79,950,423
(GRCh38/hg38)
Size:
15,524 bases
Orientation:
Plus strand
chr12:80,328,681-80,334,448
(GRCh37/hg19)
Size:
5,768 bases
Orientation:
Plus strand

Genomic View for PPP1R12A-AS1 Gene

Genes around PPP1R12A-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PPP1R12A-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PPP1R12A-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PPP1R12A-AS1 Gene

Proteins for PPP1R12A-AS1 Gene

Post-translational modifications for PPP1R12A-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PPP1R12A-AS1 Gene

Domains & Families for PPP1R12A-AS1 Gene

Gene Families for PPP1R12A-AS1 Gene

genes like me logo Genes that share domains with PPP1R12A-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PPP1R12A-AS1 Gene

Function for PPP1R12A-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PPP1R12A-AS1 Gene

Localization for PPP1R12A-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PPP1R12A-AS1 Gene

Pathways & Interactions for PPP1R12A-AS1 Gene

PathCards logo

SuperPathways for PPP1R12A-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for PPP1R12A-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PPP1R12A-AS1 Gene

Drugs & Compounds for PPP1R12A-AS1 Gene

No Compound Related Data Available

Transcripts for PPP1R12A-AS1 Gene

mRNA/cDNA for PPP1R12A-AS1 Gene

(3) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) NONCODE transcripts :
(18) RNACentral transcripts :
(2) LncBook transcripts :
(12) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for PPP1R12A-AS1 Gene

No ASD Table

Relevant External Links for PPP1R12A-AS1 Gene

GeneLoc Exon Structure for
PPP1R12A-AS1
ECgene alternative splicing isoforms for
PPP1R12A-AS1

Expression for PPP1R12A-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PPP1R12A-AS1 Gene

Orthologs for PPP1R12A-AS1 Gene

Evolution for PPP1R12A-AS1 Gene

ENSEMBL:
Gene Tree for PPP1R12A-AS1 (if available)
TreeFam:
Gene Tree for PPP1R12A-AS1 (if available)

No data available for Orthologs for PPP1R12A-AS1 Gene

Paralogs for PPP1R12A-AS1 Gene

No data available for Paralogs for PPP1R12A-AS1 Gene

Variants for PPP1R12A-AS1 Gene

Sequence variations from dbSNP and Humsavar for PPP1R12A-AS1 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000081748 -- 79,941,335(+) G/A non_coding_transcript_variant
rs1000272563 -- 79,936,228(+) A/G intron_variant
rs1000727521 -- 79,936,438(+) A/C intron_variant
rs1000956017 -- 79,939,535(+) A/G intron_variant
rs1001093303 -- 79,939,796(+) T/C intron_variant

Additional Variant Information for PPP1R12A-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PPP1R12A-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for PPP1R12A-AS1 Gene

Disorders for PPP1R12A-AS1 Gene

Additional Disease Information for PPP1R12A-AS1

No disorders were found for PPP1R12A-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PPP1R12A-AS1 Gene

Publications for PPP1R12A-AS1 Gene

  1. Identification of antisense long noncoding RNAs that function as SINEUPs in human cells. (PMID: 27646849) Schein A … Carninci P (Scientific reports 2016) 2 3 56

Products for PPP1R12A-AS1 Gene

Sources for PPP1R12A-AS1 Gene