PPM1K-DT Gene (RNA Gene)

PPM1K Divergent Transcript

GC04P088287
GIFtS:
9
See more...

Aliases for PPM1K-DT Gene

Data sources for PPM1K-DT Gene:

Subcategory (RNA class) for PPM1K-DT Gene

lncRNA

Aliases for PPM1K-DT Gene

External Ids for PPM1K-DT Gene

Summaries for PPM1K-DT Gene

GeneCards Summary for PPM1K-DT Gene

PPM1K-DT (PPM1K Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for PPM1K-DT Gene

Additional gene information for PPM1K-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PPM1K-DT Gene

Genomics for PPM1K-DT Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for PPM1K-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH04J088279 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 287.7 -1.0 -1018 6.7 CHD2 TBP ZBTB10 SP1 FEZF1 NR2C1 MNT SMAD5 ZFP64 MBD2 PPM1K-DT PPM1K lnc-ABCG2-2 HERC6 RF00026-805 RNU6-112P ABCG2
GH04J088275 Enhancer 0.7 ENCODE dbSUPER 38.7 -8.5 -8546 0.2 SPI1 BHLHE40 ELF1 IKZF1 IKZF2 TCF12 DPF2 RUNX3 RELB ZBTB40 RF00026-805 RNU6-112P piR-31927 PPM1K-DT lnc-ABCG2-2 PPM1K ABCG2
GH04J088287 Enhancer 0.7 Ensembl ENCODE dbSUPER 31.3 +3.2 3172 0.9 NFE2 MAFG MTA2 PPM1K-DT PPM1K piR-31199-268 HERC6
GH04J088230 Promoter/Enhancer 1.2 EPDnew Ensembl ENCODE CraniofacialAtlas 19 -52.8 -52816 1.8 GATA2 NFIC ABCG2 PPM1K-DT PPM1K RNU6-112P RNU6ATAC31P PIGY PYURF ENSG00000249755 RF00026-804 PKD2
GH04J088340 Enhancer 0.8 Ensembl ENCODE 16.3 +57.3 57265 2.1 FOXA2 PRDM6 FOXA1 ZNF362 IKZF1 TRIM28 FOSL2 SPI1 FOS ZBTB17 PPM1K-DT HERC6 PPM1K lnc-HERC6-1 ENSG00000207480
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PPM1K-DT on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for PPM1K-DT Gene

Latest Assembly
chr4:88,284,190-88,341,903
(GRCh38/hg38)
Size:
57,714 bases
Orientation:
Plus strand

Previous Assembly
chr4:89,206,082-89,262,809
(GRCh37/hg19 by Entrez Gene)
Size:
56,728 bases
Orientation:
Plus strand

chr4:89,206,094-89,252,573
(GRCh37/hg19 by Ensembl)
Size:
46,480 bases
Orientation:
Plus strand

Genomic View for PPM1K-DT Gene

Genes around PPM1K-DT on UCSC Golden Path with GeneCards custom track
PPM1K-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
PPM1K-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PPM1K-DT Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for PPM1K-DT Gene

Proteins for PPM1K-DT Gene

Products:

  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for PPM1K-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for PPM1K-DT Gene

Domains & Families for PPM1K-DT Gene

Gene Families for PPM1K-DT Gene

HGNC:
genes like me logo Genes that share domains with PPM1K-DT: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PPM1K-DT Gene

Function for PPM1K-DT Gene

Products:

  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PPM1K-DT Gene

Localization for PPM1K-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PPM1K-DT Gene

Pathways & Interactions for PPM1K-DT Gene

PathCards logo

SuperPathways for PPM1K-DT Gene

No Data Available

Gene Ontology (GO) - Biological Process for PPM1K-DT Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PPM1K-DT Gene

Drugs & Compounds for PPM1K-DT Gene

Products:

  1. Drug products for research
No Compound Related Data Available

Transcripts for PPM1K-DT Gene

Products:

  1. CRISPR products for research
  2. miRNA products for research
  3. Inhibitory RNAs for research
  4. Clone products for research

Non-coding RNA (ncRNA) Transcripts from RNAcentral for PPM1K-DT Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000D5E367_9606 lncRNA 1665 2

Ensembl: ENST00000500009 (view in UCSC) ,

LNCipedia: lnc-HERC6-2:8,

URS0000EF41E8_9606 lncRNA 1948 1

Ensembl: ENST00000662571 (view in UCSC) ,

URS0000EF6792_9606 lncRNA 1806 1

Ensembl: ENST00000652965 (view in UCSC) ,

URS0000A76A54_9606 lncRNA 1666 1

RefSeq: NR_134236,

URS0000EEF09A_9606 lncRNA 1617 1

Ensembl: ENST00000661338 (view in UCSC) ,

PPM1K-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for PPM1K-DT Gene

4 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for PPM1K-DT Gene

No ASD Table

Relevant External Links for PPM1K-DT Gene

GeneLoc Exon Structure for
PPM1K-DT

Expression for PPM1K-DT Gene

Products:

  1. Primer products for research

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for PPM1K-DT

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PPM1K-DT Gene

Orthologs for PPM1K-DT Gene

Evolution for PPM1K-DT Gene

ENSEMBL:
Gene Tree for PPM1K-DT (if available)
TreeFam:
Gene Tree for PPM1K-DT (if available)

No data available for Orthologs for PPM1K-DT Gene

Paralogs for PPM1K-DT Gene

No data available for Paralogs for PPM1K-DT Gene

Variants for PPM1K-DT Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for PPM1K-DT Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for PPM1K-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PPM1K-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for PPM1K-DT Gene

Disorders for PPM1K-DT Gene

Additional Disease Information for PPM1K-DT

Open Targets Platform
Open Targets Platform

No disorders were found for PPM1K-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PPM1K-DT Gene

Publications for PPM1K-DT Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

No data available for Mastermind for PPM1K-DT Gene

Products for PPM1K-DT Gene

Sources for PPM1K-DT Gene