Aliases for PPM1F-AS1 Gene

Subcategory (RNA class) for PPM1F-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for PPM1F-AS1 Gene

  • PPM1F Antisense RNA 1 2 3 5
  • PPM1F-AS1 2 5
  • NONHSAG033386.2 91
  • HSALNG0134272 164
  • Lnc-PPIL2-1 165

External Ids for PPM1F-AS1 Gene

Previous GeneCards Identifiers for PPM1F-AS1 Gene

  • GC22U901557

Summaries for PPM1F-AS1 Gene

GeneCards Summary for PPM1F-AS1 Gene

PPM1F-AS1 (PPM1F Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for PPM1F-AS1 Gene

  • Metazoan signal recognition particle RNA

Additional gene information for PPM1F-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PPM1F-AS1 Gene

Genomics for PPM1F-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for PPM1F-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PPM1F-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for PPM1F-AS1 Gene

Genomic Locations for PPM1F-AS1 Gene
chr22:21,938,237-21,977,632
(GRCh38/hg38)
Size:
39,396 bases
Orientation:
Plus strand
chr22:22,292,609-22,297,806
(GRCh37/hg19)
Size:
5,198 bases
Orientation:
Plus strand

Genomic View for PPM1F-AS1 Gene

Genes around PPM1F-AS1 on UCSC Golden Path with GeneCards custom track
PPM1F-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
PPM1F-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PPM1F-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PPM1F-AS1 Gene

Proteins for PPM1F-AS1 Gene

Post-translational modifications for PPM1F-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PPM1F-AS1 Gene

Domains & Families for PPM1F-AS1 Gene

Gene Families for PPM1F-AS1 Gene

genes like me logo Genes that share domains with PPM1F-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PPM1F-AS1 Gene

Function for PPM1F-AS1 Gene

Phenotypes From GWAS Catalog for PPM1F-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PPM1F-AS1 Gene

Localization for PPM1F-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PPM1F-AS1 Gene

Pathways & Interactions for PPM1F-AS1 Gene

PathCards logo

SuperPathways for PPM1F-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for PPM1F-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PPM1F-AS1 Gene

Drugs & Compounds for PPM1F-AS1 Gene

No Compound Related Data Available

Transcripts for PPM1F-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for PPM1F-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000BC44E8_9606 lncRNA 3709 2

HGNC: 40888,

RefSeq: NR_147620,

URS00007E31B9_9606 lncRNA 37852 1

Ensembl: ENST00000458178 (view in UCSC) ,

URS0000EF35E1_9606 lncRNA 2256 1

Ensembl: ENST00000653280 (view in UCSC) ,

URS00008BD25B_9606 lncRNA 2591 3

LncBook: HSALNT0275656,

LNCipedia: lnc-PPIL2-1:3,

NONCODE: NONHSAT083725.2,

URS00005ABA07_9606 lncRNA 3647 1

NONCODE: NONHSAT083726.2,

PPM1F-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for PPM1F-AS1 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for PPM1F-AS1 Gene

No ASD Table

Relevant External Links for PPM1F-AS1 Gene

GeneLoc Exon Structure for
PPM1F-AS1

Expression for PPM1F-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for PPM1F-AS1

SOURCE GeneReport for Unigene cluster for PPM1F-AS1 Gene:

Hs.659180
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PPM1F-AS1 Gene

Orthologs for PPM1F-AS1 Gene

Evolution for PPM1F-AS1 Gene

ENSEMBL:
Gene Tree for PPM1F-AS1 (if available)
TreeFam:
Gene Tree for PPM1F-AS1 (if available)

No data available for Orthologs for PPM1F-AS1 Gene

Paralogs for PPM1F-AS1 Gene

No data available for Paralogs for PPM1F-AS1 Gene

Variants for PPM1F-AS1 Gene

Additional dbSNP identifiers (rs#s) for PPM1F-AS1 Gene

Additional Variant Information for PPM1F-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PPM1F-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for PPM1F-AS1 Gene

Disorders for PPM1F-AS1 Gene

No disorders were found for PPM1F-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PPM1F-AS1 Gene

Publications for PPM1F-AS1 Gene

No publications were found for PPM1F-AS1 Gene.

No data available for Mastermind for PPM1F-AS1 Gene

Products for PPM1F-AS1 Gene

Sources for PPM1F-AS1 Gene