Aliases for PPFIA2-AS1 Gene

Subcategory (RNA class) for PPFIA2-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for PPFIA2-AS1 Gene

  • PPFIA2 Antisense RNA 1 2 3 5
  • PPFIA2-AS1 2 5 165
  • NONHSAG011807.2 91
  • HSALNG0092711 164

External Ids for PPFIA2-AS1 Gene

Summaries for PPFIA2-AS1 Gene

GeneCards Summary for PPFIA2-AS1 Gene

PPFIA2-AS1 (PPFIA2 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for PPFIA2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PPFIA2-AS1 Gene

Genomics for PPFIA2-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for PPFIA2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J081270 Promoter 0.4 EPDnew 600.7 +0.0 24 0.1 RBM22 PPFIA2-AS1 LOC105369872 LIN7A PPFIA2
GH12J081274 Enhancer 0.2 Ensembl 0.7 +4.1 4093 0.2 PPFIA2-AS1 LOC105369872 LIN7A PPFIA2
GH12J081296 Enhancer 0.3 Ensembl ENCODE 0.3 +26.6 26557 1.2 ENSG00000258026 PPFIA2-AS1 LOC105369872 LIN7A PPFIA2
GH12J081306 Enhancer 0.2 FANTOM5 0.3 +35.8 35781 0.3 PPFIA2 ENSG00000258026 LOC105369872 PPFIA2-AS1 LIN7A
GH12J081297 Enhancer 0.2 Ensembl 0.3 +27.3 27292 0.2 PPFIA2-AS1 LOC105369872 LIN7A PPFIA2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PPFIA2-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for PPFIA2-AS1 Gene

Genomic Locations for PPFIA2-AS1 Gene
chr12:81,270,608-81,312,422
(GRCh38/hg38)
Size:
41,815 bases
Orientation:
Plus strand
chr12:81,664,454-81,706,201
(GRCh37/hg19)
Size:
41,748 bases
Orientation:
Plus strand

Genomic View for PPFIA2-AS1 Gene

Genes around PPFIA2-AS1 on UCSC Golden Path with GeneCards custom track
PPFIA2-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
PPFIA2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PPFIA2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PPFIA2-AS1 Gene

Proteins for PPFIA2-AS1 Gene

Post-translational modifications for PPFIA2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PPFIA2-AS1 Gene

Domains & Families for PPFIA2-AS1 Gene

Gene Families for PPFIA2-AS1 Gene

genes like me logo Genes that share domains with PPFIA2-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PPFIA2-AS1 Gene

Function for PPFIA2-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PPFIA2-AS1 Gene

Localization for PPFIA2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PPFIA2-AS1 Gene

Pathways & Interactions for PPFIA2-AS1 Gene

PathCards logo

SuperPathways for PPFIA2-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for PPFIA2-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PPFIA2-AS1 Gene

Drugs & Compounds for PPFIA2-AS1 Gene

No Compound Related Data Available

Transcripts for PPFIA2-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for PPFIA2-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000016217C_9606 lncRNA 801 4

Ensembl: ENST00000551699 (view in UCSC) ,

LncBook: HSALNT0192121,

LNCipedia: PPFIA2-AS1:17,

NONCODE: NONHSAT029696.2,

URS00006038D8_9606 lncRNA 790 4

Ensembl: ENST00000550938 (view in UCSC) ,

LncBook: HSALNT0192123,

LNCipedia: PPFIA2-AS1:18,

NONCODE: NONHSAT029697.2,

URS00002A7996_9606 lncRNA 752 4

Ensembl: ENST00000550999 (view in UCSC) ,

LncBook: HSALNT0192127,

LNCipedia: PPFIA2-AS1:19,

NONCODE: NONHSAT029699.2,

URS000012A7EC_9606 lncRNA 588 4

Ensembl: ENST00000550138 (view in UCSC) ,

LncBook: HSALNT0192117,

LNCipedia: PPFIA2-AS1:16,

NONCODE: NONHSAT029694.2,

URS000014BD5F_9606 lncRNA 1080 3

Ensembl: ENST00000549161 (view in UCSC) ,

LncBook: HSALNT0192115,

NONCODE: NONHSAT029693.2,

PPFIA2-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for PPFIA2-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for PPFIA2-AS1 Gene

No ASD Table

Relevant External Links for PPFIA2-AS1 Gene

GeneLoc Exon Structure for
PPFIA2-AS1

Expression for PPFIA2-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for PPFIA2-AS1

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PPFIA2-AS1 Gene

Orthologs for PPFIA2-AS1 Gene

Evolution for PPFIA2-AS1 Gene

ENSEMBL:
Gene Tree for PPFIA2-AS1 (if available)
TreeFam:
Gene Tree for PPFIA2-AS1 (if available)

No data available for Orthologs for PPFIA2-AS1 Gene

Paralogs for PPFIA2-AS1 Gene

No data available for Paralogs for PPFIA2-AS1 Gene

Variants for PPFIA2-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for PPFIA2-AS1 Gene

SNP ID Clinical significance and condition Chr 12 pos Variation AA Info Type
791363 Benign: not provided 81,295,039(+) TTAGA/T INTRON_VARIANT

Additional dbSNP identifiers (rs#s) for PPFIA2-AS1 Gene

Additional Variant Information for PPFIA2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PPFIA2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for PPFIA2-AS1 Gene

Disorders for PPFIA2-AS1 Gene

No disorders were found for PPFIA2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PPFIA2-AS1 Gene

Publications for PPFIA2-AS1 Gene

  1. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3

No data available for Mastermind for PPFIA2-AS1 Gene

Products for PPFIA2-AS1 Gene

Sources for PPFIA2-AS1 Gene