Aliases for PPEF1-AS1 Gene

Subcategory (RNA class) for PPEF1-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for PPEF1-AS1 Gene

  • PPEF1 Antisense RNA 1 2 3 5
  • PPEF1-AS1 2 5 165
  • PPEF1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • NONHSAG054114.2 91
  • HSALNG0136880 164

External Ids for PPEF1-AS1 Gene

Previous GeneCards Identifiers for PPEF1-AS1 Gene

  • GC00U933147

Summaries for PPEF1-AS1 Gene

GeneCards Summary for PPEF1-AS1 Gene

PPEF1-AS1 (PPEF1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for PPEF1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PPEF1-AS1 Gene

Genomics for PPEF1-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for PPEF1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ018690 Promoter/Enhancer 0.8 EPDnew Ensembl 600.7 +1.1 1086 1.6 CEBPB JUND EP300 FOS GATA2 PPEF1 PPEF1-AS1 5MWI_A-185 lnc-PPEF1-2 PHKA2
GH0XJ018681 Enhancer 0.6 Ensembl 0.4 +9.9 9886 2 RELB RUNX3 GATAD2B TCF12 ZNF592 EBF1 BHLHE40 ZNF687 MLLT1 RAD51 PPEF1 5MWI_A-185 PPEF1-AS1 lnc-PPEF1-2 PHKA2
GH0XJ018698 Enhancer 0.3 ENCODE 0.4 -6.2 -6210 0.2 CEBPB FEZF1 piR-48455 PPEF1-AS1 PPEF1 PHKA2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PPEF1-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for PPEF1-AS1 Gene

Genomic Locations for PPEF1-AS1 Gene
chrX:18,688,643-18,692,687
(GRCh38/hg38)
Size:
4,045 bases
Orientation:
Minus strand
chrX:18,706,762-18,709,723
(GRCh37/hg19)
Size:
2,962 bases
Orientation:
Minus strand

Genomic View for PPEF1-AS1 Gene

Genes around PPEF1-AS1 on UCSC Golden Path with GeneCards custom track
PPEF1-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
PPEF1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PPEF1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PPEF1-AS1 Gene

Proteins for PPEF1-AS1 Gene

Post-translational modifications for PPEF1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PPEF1-AS1 Gene

Domains & Families for PPEF1-AS1 Gene

Gene Families for PPEF1-AS1 Gene

genes like me logo Genes that share domains with PPEF1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PPEF1-AS1 Gene

Function for PPEF1-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PPEF1-AS1 Gene

Localization for PPEF1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PPEF1-AS1 Gene

Pathways & Interactions for PPEF1-AS1 Gene

PathCards logo

SuperPathways for PPEF1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for PPEF1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PPEF1-AS1 Gene

Drugs & Compounds for PPEF1-AS1 Gene

No Compound Related Data Available

Transcripts for PPEF1-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for PPEF1-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005EFBA2_9606 lncRNA 430 4

Ensembl: ENST00000430641 (view in UCSC) ,

LncBook: HSALNT0280671,

LNCipedia: PPEF1-AS1:2,

NONCODE: NONHSAT136420.2,

URS000075D706_9606 lncRNA 492 3

HGNC: 40463,

RefSeq: NR_046642,

LNCipedia: PPEF1-AS1:3,

URS00008B53A4_9606 lncRNA 491 2

LNCipedia: PPEF1-AS1:1,

NONCODE: NONHSAT223218.1,

URS00009C43BE_9606 lncRNA 430 2

LncBook: HSALNT0280672,

NONCODE: NONHSAT223217.1,

PPEF1-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for PPEF1-AS1 Gene

2 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for PPEF1-AS1 Gene

No ASD Table

Relevant External Links for PPEF1-AS1 Gene

GeneLoc Exon Structure for
PPEF1-AS1

Expression for PPEF1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for PPEF1-AS1 Gene

genes like me logo Genes that share expression patterns with PPEF1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PPEF1-AS1 Gene

Orthologs for PPEF1-AS1 Gene

Evolution for PPEF1-AS1 Gene

ENSEMBL:
Gene Tree for PPEF1-AS1 (if available)
TreeFam:
Gene Tree for PPEF1-AS1 (if available)

No data available for Orthologs for PPEF1-AS1 Gene

Paralogs for PPEF1-AS1 Gene

No data available for Paralogs for PPEF1-AS1 Gene

Variants for PPEF1-AS1 Gene

Additional dbSNP identifiers (rs#s) for PPEF1-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for PPEF1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2752317 CNV gain 17911159
esv33517 CNV loss 17666407

Additional Variant Information for PPEF1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PPEF1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for PPEF1-AS1 Gene

Disorders for PPEF1-AS1 Gene

No disorders were found for PPEF1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PPEF1-AS1 Gene

Publications for PPEF1-AS1 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3

Products for PPEF1-AS1 Gene

Sources for PPEF1-AS1 Gene