Aliases for PP2672 Gene

Subcategory (RNA class) for PP2672 Gene

lncRNA

Number of RNA Genes sources:

0 / 14

Aliases for PP2672 Gene

  • Uncharacterized LOC100130249 3
  • HCG1985569 13

External Ids for PP2672 Gene

Previous GeneCards Identifiers for PP2672 Gene

  • GC01U901703
  • GC01M232962
  • GC01M234896

Summaries for PP2672 Gene

GeneCards Summary for PP2672 Gene

PP2672 (Uncharacterized LOC100130249) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for PP2672 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PP2672 Gene

Genomics for PP2672 Gene

GeneHancer (GH) Regulatory Elements for PP2672 Gene

Promoters and enhancers for PP2672 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J234758 Enhancer 1.1 Ensembl ENCODE dbSUPER 500.7 +0.7 673 4.2 HDAC2 CBFB GABPA TRIM24 TCF12 SPI1 GABPB1 ETS1 ELF1 FOXP2 ENSG00000279261 PP2672 ENSG00000238005 LOC105373210
GH01J234763 Enhancer 1 Ensembl dbSUPER 0.7 -3.8 -3826 2.4 FOS TCF7 TEAD1 ZKSCAN8 MCM3 FOXA2 SAP130 ZNF205 MIER3 GABPB1 RPS21P1 IRF2BP2 PP2672 piR-53456
GH01J234765 Enhancer 0.6 Ensembl 0.4 -5.5 -5527 0.6 NR2F2 RXRA NR2F6 CEBPB HNF4A NFATC1 NR2F1 HLF NFIC PPARG PP2672 piR-53456
GH01J234767 Enhancer 0.5 Ensembl dbSUPER 0.4 -6.3 -6327 0.2 CEBPB CEBPA piR-53456 PP2672
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PP2672 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the PP2672 gene promoter:
  • C/EBPbeta
  • HNF-1
  • HNF-1A
  • HOXA9
  • HOXA9B
  • HSF1 (long)
  • HSF1short
  • Meis-1
  • Meis-1b
  • STAT5B

Genomic Locations for PP2672 Gene

Genomic Locations for PP2672 Gene
chr1:234,757,619-234,760,374
(GRCh38/hg38)
Size:
2,756 bases
Orientation:
Minus strand
chr1:234,893,366-234,895,803
(GRCh37/hg19)
Size:
2,438 bases
Orientation:
Minus strand

Genomic View for PP2672 Gene

Genes around PP2672 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PP2672 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PP2672 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PP2672 Gene

Proteins for PP2672 Gene

  • Protein details for PP2672 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    Q8WYG7-Q8WYG7_HUMAN
    Recommended name:
    HCG1985569
    Protein Accession:
    Q8WYG7

    Protein attributes for PP2672 Gene

    Size:
    182 amino acids
    Molecular mass:
    20181 Da
    Quaternary structure:
    No Data Available

neXtProt entry for PP2672 Gene

Post-translational modifications for PP2672 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PP2672 Gene

Domains & Families for PP2672 Gene

Protein Domains for PP2672 Gene

ProtoNet:
genes like me logo Genes that share domains with PP2672: view

No data available for Gene Families , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PP2672 Gene

Function for PP2672 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PP2672 Gene

Localization for PP2672 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PP2672 Gene

Pathways & Interactions for PP2672 Gene

PathCards logo

SuperPathways for PP2672 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for PP2672 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PP2672 Gene

Drugs & Compounds for PP2672 Gene

No Compound Related Data Available

Transcripts for PP2672 Gene

mRNA/cDNA for PP2672 Gene

1 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for PP2672 Gene

No ASD Table

Relevant External Links for PP2672 Gene

GeneLoc Exon Structure for
PP2672

Expression for PP2672 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for PP2672

SOURCE GeneReport for Unigene cluster for PP2672 Gene:

Hs.617350
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PP2672 Gene

Orthologs for PP2672 Gene

No data available for Orthologs and Evolution for PP2672 Gene

Paralogs for PP2672 Gene

No data available for Paralogs for PP2672 Gene

Variants for PP2672 Gene

Additional dbSNP identifiers (rs#s) for PP2672 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PP2672 Gene

Disorders for PP2672 Gene

Additional Disease Information for PP2672

Genetic Association Database
(GAD)

No disorders were found for PP2672 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PP2672 Gene

Publications for PP2672 Gene

  1. Common genetic variation and the control of HIV-1 in humans. (PMID: 20041166) Fellay J … NIAID Center for HIV/AIDS Vaccine Immunology (CHAVI) (PLoS genetics 2009) 41 54
  2. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 13 54

No data available for Mastermind for PP2672 Gene

Products for PP2672 Gene

Sources for PP2672 Gene