Aliases for POU6F2-AS2 Gene

Subcategory (RNA class) for POU6F2-AS2 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for POU6F2-AS2 Gene

  • POU6F2 Antisense RNA 2 2 3 5
  • POU6F2 Antisense RNA 2 (Non-Protein Coding) 2 3
  • POU6F2-AS2 2 168
  • NONHSAG047391 92
  • HSALNG0057357 167

External Ids for POU6F2-AS2 Gene

Previous GeneCards Identifiers for POU6F2-AS2 Gene

  • GC07M039024
  • GC07M039147
  • GC07M039371

Summaries for POU6F2-AS2 Gene

GeneCards Summary for POU6F2-AS2 Gene

POU6F2-AS2 (POU6F2 Antisense RNA 2) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with POU6F2-AS2 include Squamous Cell Carcinoma.

Additional gene information for POU6F2-AS2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for POU6F2-AS2 Gene

Genomics for POU6F2-AS2 Gene

GeneHancer (GH) Regulatory Elements for POU6F2-AS2 Gene

Promoters and enhancers for POU6F2-AS2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J039013 Promoter/Enhancer 1 Ensembl ENCODE 500.7 -0.3 -332 1.8 CTBP1 NFRKB TAF9B CREB3L1 POLR2H BCOR EHMT2 SKIL MNT ZNF395 POU6F2-AS2 piR-33432-477 piR-35421-005 POU6F2
GH07J039016 Enhancer 0.7 Ensembl ENCODE 0.7 -3.6 -3632 1.2 ZNF217 RFX1 CTBP1 GATA3 MYC NFIB ZBTB33 ZBTB40 TCF7L2 MNT TRGV7 ENSG00000259826 POU6F2-AS2 piR-35421-005 POU6F2
GH07J039034 Enhancer 0.8 UCNEbase Ensembl 0.4 -21.5 -21533 2.6 MYNN EZH2 TAF1 ESR1 ZNF143 ENSG00000259826 piR-35421-005 POU6F2-AS2 POU6F2
GH07J039027 Enhancer 0.4 Ensembl 0.4 -13.8 -13833 0.4 NFIC NFIB SMARCA4 LCORL POU6F2 POU6F2-AS2 piR-35421-005
GH07J039004 Enhancer 0.3 Ensembl ENCODE 0.4 +8.6 8588 0.4 POU6F2 piR-37026-554 lnc-YAE1D1-4 POU6F2-AS2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around POU6F2-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for POU6F2-AS2 Gene

Genomic Locations for POU6F2-AS2 Gene
chr7:38,979,894-39,013,568
(GRCh38/hg38)
Size:
33,675 bases
Orientation:
Minus strand
chr7:39,023,843-39,053,151
(GRCh37/hg19)
Size:
29,309 bases
Orientation:
Minus strand

Genomic View for POU6F2-AS2 Gene

Genes around POU6F2-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
POU6F2-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for POU6F2-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for POU6F2-AS2 Gene

Proteins for POU6F2-AS2 Gene

Post-translational modifications for POU6F2-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for POU6F2-AS2 Gene

Domains & Families for POU6F2-AS2 Gene

Gene Families for POU6F2-AS2 Gene

genes like me logo Genes that share domains with POU6F2-AS2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for POU6F2-AS2 Gene

Function for POU6F2-AS2 Gene

Phenotypes From GWAS Catalog for POU6F2-AS2 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for POU6F2-AS2 Gene

Localization for POU6F2-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for POU6F2-AS2 Gene

Pathways & Interactions for POU6F2-AS2 Gene

PathCards logo

SuperPathways for POU6F2-AS2 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for POU6F2-AS2 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for POU6F2-AS2 Gene

Drugs & Compounds for POU6F2-AS2 Gene

No Compound Related Data Available

Transcripts for POU6F2-AS2 Gene

mRNA/cDNA for POU6F2-AS2 Gene

8 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
4 NONCODE transcripts :
5 LncBook transcripts :
3 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for POU6F2-AS2 Gene

No ASD Table

Relevant External Links for POU6F2-AS2 Gene

GeneLoc Exon Structure for
POU6F2-AS2

Expression for POU6F2-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for POU6F2-AS2 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for POU6F2-AS2

SOURCE GeneReport for Unigene cluster for POU6F2-AS2 Gene:

Hs.675876
genes like me logo Genes that share expression patterns with POU6F2-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for POU6F2-AS2 Gene

Orthologs for POU6F2-AS2 Gene

Evolution for POU6F2-AS2 Gene

ENSEMBL:
Gene Tree for POU6F2-AS2 (if available)
TreeFam:
Gene Tree for POU6F2-AS2 (if available)

No data available for Orthologs for POU6F2-AS2 Gene

Paralogs for POU6F2-AS2 Gene

No data available for Paralogs for POU6F2-AS2 Gene

Variants for POU6F2-AS2 Gene

Additional dbSNP identifiers (rs#s) for POU6F2-AS2 Gene

Additional Variant Information for POU6F2-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
POU6F2-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for POU6F2-AS2 Gene

Disorders for POU6F2-AS2 Gene

MalaCards: The human disease database

(1) MalaCards diseases for POU6F2-AS2 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
squamous cell carcinoma
  • epidermoid carcinoma
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for POU6F2-AS2

genes like me logo Genes that share disorders with POU6F2-AS2: view

No data available for UniProtKB/Swiss-Prot and Genatlas for POU6F2-AS2 Gene

Publications for POU6F2-AS2 Gene

  1. Long noncoding RNA POU6F2-AS2 is associated with oesophageal squamous cell carcinoma. (PMID: 27033944) Liu J … Sun X (Journal of biochemistry 2016) 2 3 54
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54

Products for POU6F2-AS2 Gene

Sources for POU6F2-AS2 Gene