Aliases for POU6F2-AS1 Gene

Subcategory (RNA class) for POU6F2-AS1 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for POU6F2-AS1 Gene

  • POU6F2 Antisense RNA 1 2 3 5
  • POU6F2 Antisense RNA 1 (Non-Protein Coding) 2 3
  • POU6F2-AS1 2 168
  • NONHSAG047394 92

External Ids for POU6F2-AS1 Gene

Previous GeneCards Identifiers for POU6F2-AS1 Gene

  • GC07M039445

Summaries for POU6F2-AS1 Gene

GeneCards Summary for POU6F2-AS1 Gene

POU6F2-AS1 (POU6F2 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for POU6F2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for POU6F2-AS1 Gene

Genomics for POU6F2-AS1 Gene

GeneHancer (GH) Regulatory Elements for POU6F2-AS1 Gene

Promoters and enhancers for POU6F2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J039407 Enhancer 0.7 Ensembl 518.3 -0.8 -822 1.6 NR2F2 NFIC MAFF ZNF184 SMARCA5 ELF1 ZBTB48 IKZF1 NR2F1 MAFG POU6F2-AS1 RF00104-027 RF00017-6126 POU6F2
GH07J039413 Promoter/Enhancer 1.4 FANTOM5 ENCODE CraniofacialAtlas 13.9 -7.8 -7788 1.5 ZSCAN5C CTCF ZIC2 ZBTB26 RELA EZH2 HINFP HDAC2 ZNF341 POLR2A POU6F2-AS1 POU6F2 RF00104-027 RF00017-6126
GH07J039333 Enhancer 0.7 Ensembl ENCODE 11.1 +73.0 72978 2 RELA HDAC2 YY1 MEF2B IKZF1 EP300 POU5F1 NANOG ZNF143 EBF1 LOC105375239 POU6F2-AS1 POU6F2 FAM183BP SNORA20B RF00017-6126
GH07J039400 Enhancer 0.4 Ensembl 18.7 +5.8 5778 1.6 POLR2A ELF1 IKZF1 GABPA POU6F2-AS1 ENSG00000227172 YAE1 piR-56341-211 RF00017-6126 POU6F2
GH07J039353 Enhancer 1.4 UCNEbase Ensembl ENCODE 5.7 +53.2 53169 3.6 ZNF639 ZIC2 OSR2 NR2F2 CTCF WT1 ZNF316 ZBTB17 GATA3 ZNF76 POU6F2-AS1 5MWI_A-172 piR-56341-211 RF00017-6126 POU6F2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around POU6F2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for POU6F2-AS1 Gene

Genomic Locations for POU6F2-AS1 Gene
chr7:39,404,590-39,406,579
(GRCh38/hg38)
Size:
1,990 bases
Orientation:
Minus strand
chr7:39,444,197-39,445,945
(GRCh37/hg19)
Size:
1,749 bases
Orientation:
Minus strand

Genomic View for POU6F2-AS1 Gene

Genes around POU6F2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
POU6F2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for POU6F2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for POU6F2-AS1 Gene

Proteins for POU6F2-AS1 Gene

Post-translational modifications for POU6F2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for POU6F2-AS1 Gene

Domains & Families for POU6F2-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for POU6F2-AS1 Gene

Function for POU6F2-AS1 Gene

Phenotypes From GWAS Catalog for POU6F2-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for POU6F2-AS1 Gene

Localization for POU6F2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for POU6F2-AS1 Gene

Pathways & Interactions for POU6F2-AS1 Gene

PathCards logo

SuperPathways for POU6F2-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for POU6F2-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for POU6F2-AS1 Gene

Drugs & Compounds for POU6F2-AS1 Gene

No Compound Related Data Available

Transcripts for POU6F2-AS1 Gene

mRNA/cDNA for POU6F2-AS1 Gene

7 RNACentral transcripts :
1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 NONCODE transcripts :
3 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for POU6F2-AS1 Gene

No ASD Table

Relevant External Links for POU6F2-AS1 Gene

GeneLoc Exon Structure for
POU6F2-AS1

Expression for POU6F2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for POU6F2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for POU6F2-AS1 Gene

This gene is overexpressed in Liver (x26.8), Stomach (x15.7), and Testis (x8.3).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for POU6F2-AS1

SOURCE GeneReport for Unigene cluster for POU6F2-AS1 Gene:

Hs.571292
genes like me logo Genes that share expression patterns with POU6F2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for POU6F2-AS1 Gene

Orthologs for POU6F2-AS1 Gene

Evolution for POU6F2-AS1 Gene

ENSEMBL:
Gene Tree for POU6F2-AS1 (if available)
TreeFam:
Gene Tree for POU6F2-AS1 (if available)

No data available for Orthologs for POU6F2-AS1 Gene

Paralogs for POU6F2-AS1 Gene

No data available for Paralogs for POU6F2-AS1 Gene

Variants for POU6F2-AS1 Gene

Additional dbSNP identifiers (rs#s) for POU6F2-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for POU6F2-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv6337n100 CNV gain 25217958

Additional Variant Information for POU6F2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
POU6F2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for POU6F2-AS1 Gene

Disorders for POU6F2-AS1 Gene

Additional Disease Information for POU6F2-AS1

No disorders were found for POU6F2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for POU6F2-AS1 Gene

Publications for POU6F2-AS1 Gene

No publications were found for POU6F2-AS1 Gene.

Products for POU6F2-AS1 Gene

Sources for POU6F2-AS1 Gene