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POU5F1P4 Gene(Pseudogene)

POU Class 5 Homeobox 1 Pseudogene 4

GCID:
GC01P155444
GIFtS:
18
Genes Participants
UDN Logo

Aliases for POU5F1P4 Gene

Aliases for POU5F1P4 Gene

  • POU Class 5 Homeobox 1 Pseudogene 4 2 3 5
  • POU Domain Class 5, Transcription Factor 1 Pseudogene 4 2 3
  • POU Domain Transcription Factor OCT4-Pg4 3
  • Oct4-Pg4 3
  • POU5FLC1 3

External Ids for POU5F1P4 Gene

Previous GeneCards Identifiers for POU5F1P4 Gene

  • GC00U922238
  • GC01P153670
  • GC01P155403
  • GC01P126764
  • GC01P155436
  • GC01P155437
  • GC01P155438
  • GC01P155439
  • GC01P155441
  • GC01P155442
  • GC01P155443

Summaries for POU5F1P4 Gene

GeneCards Summary for POU5F1P4 Gene

POU5F1P4 (POU Class 5 Homeobox 1 Pseudogene 4) is a Pseudogene.

Additional gene information for POU5F1P4 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for POU5F1P4 Gene

Genomics for POU5F1P4 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for POU5F1P4 Gene

Promoters and enhancers for POU5F1P4 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01I155132 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 5.8 -297.7 -297687 5.3 HDGF PKNOX1 CLOCK SMAD1 FOXA2 MLX ARNT ARID4B SIN3A DMAP1 SLC50A1 GBAP1 SYT11 ENSG00000231064 TRIM46 DCST1-AS1 ADAM15 POU5F1P4 DPM3 EFNA1
GH01I155123 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 4.4 -305.2 -305155 8.7 PKNOX1 CLOCK FOXA2 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 EFNA1 KHDC4 GON4L CLK2 UBAP2L MSTO1 ENSG00000271267 MSTO2P LOC101928120 RUSC1-AS1
GH01I155172 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 4.3 -257.4 -257429 7.3 HDGF SMAD1 FOXA2 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 IRF4 TRIM46 KRTCAP2 GBAP1 ADAM15 MUC1 POU5F1P4 ENSG00000273088
GH01I155206 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 4.3 -224.5 -224491 4.5 HDGF PKNOX1 CLOCK SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 THBS3 MTX1 FAM189B SCAMP3 TRIM46 KRTCAP2 LMNA DAP3 POU5F1P4 LOC105371450
GH01I155069 Enhancer 1.4 Ensembl ENCODE dbSUPER 4.6 -362.4 -362352 2.8 HDGF PKNOX1 ATF1 ARID4B SIN3A DMAP1 ZNF48 ZNF121 ZNF766 GLIS2 ADAM15 GBAP1 THBS3 POU5F1P4 DCST1-AS1 EFNA3 EFNA4 ENSG00000251246
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around POU5F1P4 on UCSC Golden Path with GeneCards custom track

Genomic Locations for POU5F1P4 Gene

Genomic Locations for POU5F1P4 Gene
chr1:155,433,178-155,434,262
(GRCh38/hg38)
Size:
1,085 bases
Orientation:
Plus strand
chr1:155,402,969-155,404,053
(GRCh37/hg19)

Genomic View for POU5F1P4 Gene

Genes around POU5F1P4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
POU5F1P4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for POU5F1P4 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for POU5F1P4 Gene

Proteins for POU5F1P4 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for POU5F1P4 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    D5K9S3
    Recommended name:
    POU domain protein
    Protein Accession:
    D5K9S3

    Protein attributes for POU5F1P4 Gene

    Size:
    286 amino acids
    Molecular mass:
    31173 Da
    Quaternary structure:
    No Data Available

neXtProt entry for POU5F1P4 Gene

Post-translational modifications for POU5F1P4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for POU5F1P4 Gene

Domains & Families for POU5F1P4 Gene

Gene Families for POU5F1P4 Gene

HGNC:

Protein Domains for POU5F1P4 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for POU5F1P4 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with POU5F1P4: view

No data available for UniProtKB/Swiss-Prot for POU5F1P4 Gene

Function for POU5F1P4 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for POU5F1P4 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for POU5F1P4 Gene

Localization for POU5F1P4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for POU5F1P4 Gene

Pathways & Interactions for POU5F1P4 Gene

SuperPathways for POU5F1P4 Gene

PathCards logo More details on SuperPathways for POU5F1P4
No Data Available

Interacting Proteins for POU5F1P4 Gene

Gene Ontology (GO) - Biological Process for POU5F1P4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for POU5F1P4 Gene

Drugs & Compounds for POU5F1P4 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for POU5F1P4 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for POU5F1P4 Gene

(16) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for POU5F1P4 Gene

POU class 5 homeobox 1 pseudogene 4:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for POU5F1P4 Gene

No ASD Table

Relevant External Links for POU5F1P4 Gene

GeneLoc Exon Structure for
POU5F1P4
ECgene alternative splicing isoforms for
POU5F1P4

Expression for POU5F1P4 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for POU5F1P4 Gene

mRNA expression in normal human tissues for POU5F1P4 Gene
mRNA expression by BioGPS for POU5F1P4 GenemRNA expression by GTEx for POU5F1P4 Gene

mRNA differential expression in normal tissues according to GTEx for POU5F1P4 Gene

This gene is overexpressed in Kidney - Cortex (x6.4).

NURSA nuclear receptor signaling pathways regulating expression of POU5F1P4 Gene:

POU5F1P4

SOURCE GeneReport for Unigene cluster for POU5F1P4 Gene:

Hs.632482
genes like me logo Genes that share expression patterns with POU5F1P4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for POU5F1P4 Gene

Orthologs for POU5F1P4 Gene

Evolution for POU5F1P4 Gene

ENSEMBL:
Gene Tree for POU5F1P4 (if available)
TreeFam:
Gene Tree for POU5F1P4 (if available)

No data available for Orthologs for POU5F1P4 Gene

Paralogs for POU5F1P4 Gene

No data available for Paralogs for POU5F1P4 Gene

Variants for POU5F1P4 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for POU5F1P4 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1001850260 -- 155,434,075(+) G/C non_coding_transcript_variant
rs1002574752 -- 155,432,517(+) G/C upstream_transcript_variant
rs1002852248 -- 155,433,029(+) C/T upstream_transcript_variant
rs1002929451 -- 155,432,232(+) T/C upstream_transcript_variant
rs1003070978 -- 155,432,791(+) A/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for POU5F1P4 Gene

Variant ID Type Subtype PubMed ID
esv33869 CNV loss 17666407
nsv831636 CNV loss 17160897
nsv946415 CNV duplication 23825009

Additional Variant Information for POU5F1P4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
POU5F1P4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for POU5F1P4 Gene

Disorders for POU5F1P4 Gene

Additional Disease Information for POU5F1P4

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for POU5F1P4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for POU5F1P4 Gene

Publications for POU5F1P4 Gene

  1. Expression and differentiation between OCT4A and its Pseudogenes in human ESCs and differentiated adult somatic cells. (PMID: 24586860) Jez M … Dominko T (PloS one 2014) 3 58
  2. Pseudogene OCT4-pg4 functions as a natural micro RNA sponge to regulate OCT4 expression by competing for miR-145 in hepatocellular carcinoma. (PMID: 23615404) Wang L … Yang AG (Carcinogenesis 2013) 3 58
  3. Differential expression of Oct4 variants and pseudogenes in normal urothelium and urothelial cancer. (PMID: 23933063) Wezel F … Southgate J (The American journal of pathology 2013) 3 58
  4. Transcriptional regulation of Oct4 by a long non-coding RNA antisense to Oct4-pseudogene 5. (PMID: 21151833) Hawkins PG … Morris KV (Transcription 2010) 3 58
  5. Stem cell regulatory function mediated by expression of a novel mouse Oct4 pseudogene. (PMID: 17280643) Lin H … Lee T (Biochemical and biophysical research communications 2007) 3 58

Products for POU5F1P4 Gene

Sources for POU5F1P4 Gene

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