Aliases for POTEH-AS1 Gene

Data sources for POTEH-AS1 Gene:

RNA type for POTEH-AS1 Gene

lncRNA

Aliases for POTEH-AS1 Gene

External Ids for POTEH-AS1 Gene

Previous GeneCards Identifiers for POTEH-AS1 Gene

  • GC22P016275

Summaries for POTEH-AS1 Gene

GeneCards Summary for POTEH-AS1 Gene

POTEH-AS1 (POTEH Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for POTEH-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for POTEH-AS1 Gene

Genomics for POTEH-AS1 Gene

Genomic Locations for POTEH-AS1 Gene

Latest Assembly
chr22:15,699,360-15,703,403
(GRCh38/hg38)
Size:
4,044 bases
Orientation:
Minus strand

Previous Assembly
chr22:16,274,609-16,277,577
(GRCh37/hg19 by Entrez Gene)
Size:
2,969 bases
Orientation:
Plus strand

chr22:16,274,560-16,278,602
(GRCh37/hg19 by Ensembl)
Size:
4,043 bases
Orientation:
Plus strand

Genomic View for POTEH-AS1 Gene

Genes around POTEH-AS1 on UCSC Golden Path with GeneCards custom track
POTEH-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
POTEH-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for POTEH-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for POTEH-AS1 Gene

No data available for GeneHancer (GH) Regulatory Elements for POTEH-AS1 Gene

Proteins for POTEH-AS1 Gene

Post-translational modifications for POTEH-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for POTEH-AS1 Gene

Domains & Families for POTEH-AS1 Gene

Gene Families for POTEH-AS1 Gene

genes like me logo Genes that share domains with POTEH-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for POTEH-AS1 Gene

Function for POTEH-AS1 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for POTEH-AS1 Gene

Localization for POTEH-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for POTEH-AS1 Gene

Pathways & Interactions for POTEH-AS1 Gene

PathCards logo

SuperPathways for POTEH-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for POTEH-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for POTEH-AS1 Gene

Drugs & Compounds for POTEH-AS1 Gene

No Compound Related Data Available

Transcripts for POTEH-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for POTEH-AS1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000029F40B_9606 lncRNA 2568 4

Ensembl: ENST00000422014 (view in UCSC) ,

LncBook: HSALNT0274901,

LNCipedia: POTEH-AS1:1,

NONCODE: NONHSAT083102.2,

URS000075DAD8_9606 lncRNA 1494 2

RefSeq: NR_046571,

LNCipedia: POTEH-AS1:2,

URS0001BDB2A4_9606 lncRNA 2566 1

LncBook: HSALNT0274901,

POTEH-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for POTEH-AS1 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for POTEH-AS1 Gene

No ASD Table

Relevant External Links for POTEH-AS1 Gene

GeneLoc Exon Structure for
POTEH-AS1

Expression for POTEH-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for POTEH-AS1 Gene

mRNA expression in normal human tissues for POTEH-AS1 Gene
genes like me logo Genes that share expression patterns with POTEH-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for POTEH-AS1 Gene

Orthologs for POTEH-AS1 Gene

Evolution for POTEH-AS1 Gene

ENSEMBL:
Gene Tree for POTEH-AS1 (if available)
TreeFam:
Gene Tree for POTEH-AS1 (if available)
Alliance of Genome Resources:
Additional Orthologs for POTEH-AS1

No data available for Orthologs for POTEH-AS1 Gene

Paralogs for POTEH-AS1 Gene

No data available for Paralogs for POTEH-AS1 Gene

Variants for POTEH-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for POTEH-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for POTEH-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1183e59 CNV duplication 20981092
dgv1185e59 CNV duplication 20981092
dgv168n111 CNV duplication 26073780
dgv1752n100 CNV gain 25217958
dgv1753n100 CNV gain 25217958
dgv1756n100 CNV loss 25217958
dgv1757n100 CNV gain 25217958
dgv1759n100 CNV gain 25217958
dgv1760n100 CNV gain+loss 25217958
dgv1761n100 CNV gain+loss 25217958
dgv1762n100 CNV loss 25217958
dgv1763n100 CNV gain 25217958
dgv1764n100 CNV loss 25217958
dgv1765n100 CNV gain+loss 25217958
dgv1766n100 CNV gain 25217958
dgv1767n100 CNV loss 25217958
dgv1768n100 CNV gain 25217958
dgv1769n100 CNV gain 25217958
dgv1770n100 CNV gain+loss 25217958
dgv1771n100 CNV loss 25217958
dgv2530e59 CNV duplication 20981092
dgv2532e59 CNV duplication 20981092
dgv33e203 CNV gain+loss 21179565
dgv3489n54 CNV gain 21841781
dgv3494n54 CNV loss 21841781
dgv3512n54 CNV loss 21841781
dgv3513n54 CNV loss 21841781
dgv4450n100 CNV gain 25217958
dgv4451n100 CNV gain+loss 25217958
dgv4452n100 CNV loss 25217958
dgv4453n100 CNV gain 25217958
dgv4455n100 CNV loss 25217958
dgv45e180 CNV loss 20482838
dgv71n68 CNV gain 17160897
dgv7934n54 CNV gain 21841781
dgv86n111 CNV duplication 26073780
dgv98e203 CNV gain+loss 21179565
esv1005804 OTHER inversion 20482838
esv23873 CNV gain+loss 19812545
esv25550 CNV gain+loss 19812545
esv2748433 CNV deletion 23290073
esv2759971 CNV gain+loss 17122850
esv33426 CNV gain+loss 17666407
esv33527 CNV gain+loss 17666407
esv3362070 CNV duplication 20981092
esv3369988 CNV duplication 20981092
esv3384201 CNV duplication 20981092
esv3584743 CNV gain 24956385
esv3584775 CNV loss 24956385
esv3892461 CNV gain 25118596
esv3892464 CNV gain 25118596
esv3893421 CNV gain 25118596
esv995567 CNV loss 20482838
nsv1037353 CNV gain 25217958
nsv1048150 CNV gain+loss 25217958
nsv1048393 CNV gain+loss 25217958
nsv1061008 CNV loss 25217958
nsv1075456 CNV duplication 25765185
nsv1076528 CNV duplication 25765185
nsv1110234 CNV duplication 24896259
nsv1110856 OTHER inversion 24896259
nsv1141243 CNV duplication 24896259
nsv1150196 CNV duplication 26484159
nsv1153486 CNV duplication 26484159
nsv1160152 CNV duplication 26073780
nsv1160154 CNV duplication 26073780
nsv428292 CNV gain+loss 18775914
nsv433422 CNV gain 18776910
nsv436829 CNV insertion 17901297
nsv509526 CNV insertion 20534489
nsv563705 CNV loss 21841781
nsv588004 CNV gain 21841781
nsv7248 OTHER inversion 18451855
nsv819711 CNV loss 19587683
nsv821525 CNV duplication 20802225
nsv832732 CNV loss 17160897
nsv9117 CNV gain+loss 18304495
nsv951957 CNV duplication 24416366
nsv953668 CNV duplication 24416366
nsv964647 CNV duplication 23825009
nsv966055 CNV duplication 23825009
nsv974303 CNV duplication 23825009
nsv9866 CNV gain+loss 18304495

Additional Variant Information for POTEH-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
POTEH-AS1
Leiden Open Variation Database (LOVD)
POTEH-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for POTEH-AS1 Gene

Disorders for POTEH-AS1 Gene

Additional Disease Information for POTEH-AS1

No disorders were found for POTEH-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for POTEH-AS1 Gene

Publications for POTEH-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

No data available for Mastermind for POTEH-AS1 Gene

Products for POTEH-AS1 Gene

Sources for POTEH-AS1 Gene