Aliases for POTEF-AS1 Gene

Data sources for POTEF-AS1 Gene:

RNA type for POTEF-AS1 Gene

lncRNA

Aliases for POTEF-AS1 Gene

External Ids for POTEF-AS1 Gene

Summaries for POTEF-AS1 Gene

GeneCards Summary for POTEF-AS1 Gene

POTEF-AS1 (POTEF Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with POTEF-AS1 include Prostate Cancer.

Additional gene information for POTEF-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for POTEF-AS1 Gene

Genomics for POTEF-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for POTEF-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J130102 Enhancer 0.5 Ensembl 0.7 -4.7 -4682 1.2 ZNF316 SOX5 MAFG MEIS2 PKNOX1 ESRRA MAFK SOX13 EMSY RAB6C-AS1 POTEF-AS1 piR-33172-004 HSALNG0018775 POTEF RAB6C
GH02J130109 Enhancer 0.2 Ensembl 0.7 +2.0 2018 0.2 RNU6-1049P RF00026-549 RAB6C-AS1 POTEF-AS1 piR-57404-001 POTEF RAB6C
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around POTEF-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for POTEF-AS1 Gene

Latest Assembly
chr2:130,107,683-130,110,357
(GRCh38/hg38)
Size:
2,675 bases
Orientation:
Plus strand

Previous Assembly
chr2:130,865,257-130,867,314
(GRCh37/hg19 by Ensembl)
Size:
2,058 bases
Orientation:
Plus strand

Genomic View for POTEF-AS1 Gene

Genes around POTEF-AS1 on UCSC Golden Path with GeneCards custom track
POTEF-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
POTEF-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for POTEF-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for POTEF-AS1 Gene

Proteins for POTEF-AS1 Gene

Post-translational modifications for POTEF-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for POTEF-AS1 Gene

Domains & Families for POTEF-AS1 Gene

Gene Families for POTEF-AS1 Gene

genes like me logo Genes that share domains with POTEF-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for POTEF-AS1 Gene

Function for POTEF-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for POTEF-AS1 Gene

Localization for POTEF-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for POTEF-AS1 Gene

Pathways & Interactions for POTEF-AS1 Gene

PathCards logo

SuperPathways for POTEF-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for POTEF-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for POTEF-AS1 Gene

Drugs & Compounds for POTEF-AS1 Gene

No Compound Related Data Available

Transcripts for POTEF-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for POTEF-AS1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00001FFF0A_9606 lncRNA 580 4

Ensembl: ENST00000433507 (view in UCSC) ,

LncBook: HSALNT0039741,

LNCipedia: lnc-MZT2B-2:1,

NONCODE: NONHSAT074277.2,

URS0001BDCD04_9606 lncRNA 578 1

LncBook: HSALNT0039741,

POTEF-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for POTEF-AS1 Gene

No ASD Table

Relevant External Links for POTEF-AS1 Gene

GeneLoc Exon Structure for
POTEF-AS1

No data available for mRNA/cDNA for POTEF-AS1 Gene

Expression for POTEF-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for POTEF-AS1 Gene

Orthologs for POTEF-AS1 Gene

Evolution for POTEF-AS1 Gene

ENSEMBL:
Gene Tree for POTEF-AS1 (if available)
TreeFam:
Gene Tree for POTEF-AS1 (if available)
Alliance of Genome Resources:
Additional Orthologs for POTEF-AS1

No data available for Orthologs for POTEF-AS1 Gene

Paralogs for POTEF-AS1 Gene

No data available for Paralogs for POTEF-AS1 Gene

Variants for POTEF-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for POTEF-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for POTEF-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
POTEF-AS1
Leiden Open Variation Database (LOVD)
POTEF-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for POTEF-AS1 Gene

Disorders for POTEF-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for POTEF-AS1 Gene - From: LNC

Disorder Aliases PubMed IDs
prostate cancer
  • prostate cancer, somatic
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for POTEF-AS1

genes like me logo Genes that share disorders with POTEF-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for POTEF-AS1 Gene

Publications for POTEF-AS1 Gene

  1. Androgen-induced lncRNA POTEF-AS1 regulates apoptosis-related pathway to facilitate cell survival in prostate cancer cells. (PMID: 28032932) Misawa A … Inoue S (Cancer science 2017) 3 72

No data available for Mastermind for POTEF-AS1 Gene

Products for POTEF-AS1 Gene

Sources for POTEF-AS1 Gene