This locus is inferred to be a transcribed pseudogene based on the observation that protein homology is limited to the first of seven exons (indicated by alignment of AL117401.1 to the assembled human genome). This pattern suggests rapid turnover by the nonsense-mediated decay pathway. [provided by RefSeq, Jul 2008] See more...

Aliases for POM121L9P Gene

Aliases for POM121L9P Gene

  • POM121 Transmembrane Nucleoporin Like 9, Pseudogene 2 3 5
  • POM121 Membrane Glycoprotein-Like 9, Pseudogene 2 3
  • POM121 Transmembrane Nucleoporin-Like 9, Pseudogene 2
  • POM121 Membrane Glycoprotein-Like 1 Pseudogene 3
  • POM121-Like Protein 3
  • DKFZP434P211 3
  • POM121L9P 5
  • UNQ2565 3

External Ids for POM121L9P Gene

Previous GeneCards Identifiers for POM121L9P Gene

  • GC22P022978
  • GC22P024649
  • GC22P007596

Summaries for POM121L9P Gene

Entrez Gene Summary for POM121L9P Gene

  • This locus is inferred to be a transcribed pseudogene based on the observation that protein homology is limited to the first of seven exons (indicated by alignment of AL117401.1 to the assembled human genome). This pattern suggests rapid turnover by the nonsense-mediated decay pathway. [provided by RefSeq, Jul 2008]

GeneCards Summary for POM121L9P Gene

POM121L9P (POM121 Transmembrane Nucleoporin Like 9, Pseudogene) is a Pseudogene.

Additional gene information for POM121L9P Gene

No data available for CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for POM121L9P Gene

Genomics for POM121L9P Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for POM121L9P Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around POM121L9P on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the POM121L9P gene promoter:
  • E47
  • GATA-2
  • HNF-4alpha1
  • LyF-1
  • Meis-1
  • Meis-1a
  • Meis-1b
  • Olf-1
  • Tal-1beta
  • YY1

Genomic Locations for POM121L9P Gene

Genomic Locations for POM121L9P Gene
chr22:24,251,621-24,265,525
(GRCh38/hg38)
Size:
13,905 bases
Orientation:
Plus strand
chr22:24,647,589-24,661,493
(GRCh37/hg19)
Size:
13,905 bases
Orientation:
Plus strand

Genomic View for POM121L9P Gene

Genes around POM121L9P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
POM121L9P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for POM121L9P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for POM121L9P Gene

Proteins for POM121L9P Gene

Post-translational modifications for POM121L9P Gene

No Post-translational modifications

No data available for DME Specific Peptides for POM121L9P Gene

Domains & Families for POM121L9P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for POM121L9P Gene

Function for POM121L9P Gene

Phenotypes From GWAS Catalog for POM121L9P Gene

Phenotypes for POM121L9P Gene

GenomeRNAi human phenotypes for POM121L9P:
genes like me logo Genes that share phenotypes with POM121L9P: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for POM121L9P Gene

Localization for POM121L9P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for POM121L9P Gene

Pathways & Interactions for POM121L9P Gene

PathCards logo

SuperPathways for POM121L9P Gene

No Data Available

Gene Ontology (GO) - Biological Process for POM121L9P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for POM121L9P Gene

Drugs & Compounds for POM121L9P Gene

No Compound Related Data Available

Transcripts for POM121L9P Gene

mRNA/cDNA for POM121L9P Gene

1 REFSEQ mRNAs :
10 NCBI additional mRNA sequence :
3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for POM121L9P Gene

No ASD Table

Relevant External Links for POM121L9P Gene

GeneLoc Exon Structure for
POM121L9P

Expression for POM121L9P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for POM121L9P Gene

mRNA differential expression in normal tissues according to GTEx for POM121L9P Gene

This gene is overexpressed in Testis (x15.7).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for POM121L9P

SOURCE GeneReport for Unigene cluster for POM121L9P Gene:

Hs.534980
genes like me logo Genes that share expression patterns with POM121L9P: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for POM121L9P Gene

Orthologs for POM121L9P Gene

Evolution for POM121L9P Gene

ENSEMBL:
Gene Tree for POM121L9P (if available)
TreeFam:
Gene Tree for POM121L9P (if available)

No data available for Orthologs for POM121L9P Gene

Paralogs for POM121L9P Gene

No data available for Paralogs for POM121L9P Gene

Variants for POM121L9P Gene

Structural Variations from Database of Genomic Variants (DGV) for POM121L9P Gene

Variant ID Type Subtype PubMed ID
dgv4528n100 CNV gain 25217958
dgv8039n54 CNV gain 21841781
esv24290 CNV gain 19812545
esv2724041 CNV deletion 23290073
esv3575443 CNV gain 25503493
esv3893463 CNV gain 25118596
nsv1055830 CNV gain 25217958
nsv1110863 OTHER inversion 24896259
nsv1128861 CNV duplication 24896259
nsv1153105 CNV duplication 26484159
nsv483072 CNV loss 15286789
nsv526567 CNV gain 19592680
nsv7350 OTHER inversion 18451855
nsv834158 CNV gain 17160897
nsv953059 CNV deletion 24416366
nsv966093 CNV duplication 23825009
nsv9882 CNV gain+loss 18304495

Additional Variant Information for POM121L9P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
POM121L9P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) and Variation tolerance for POM121L9P Gene

Disorders for POM121L9P Gene

Additional Disease Information for POM121L9P

No disorders were found for POM121L9P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for POM121L9P Gene

Publications for POM121L9P Gene

  1. Genome-wide association study identifies three novel susceptibility loci for severe Acne vulgaris. (PMID: 24927181) Navarini AA … Barker JN (Nature communications 2014) 3
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  3. The LIFEdb database in 2006. (PMID: 16381901) Mehrle A … Wiemann S (Nucleic acids research 2006) 3
  4. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 3
  5. From ORFeome to biology: a functional genomics pipeline. (PMID: 15489336) Wiemann S … Poustka A (Genome research 2004) 3

Products for POM121L9P Gene

Sources for POM121L9P Gene