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Aliases for POM121L9P Gene

Aliases for POM121L9P Gene

  • POM121 Transmembrane Nucleoporin Like 9, Pseudogene 2 3 5
  • POM121 Membrane Glycoprotein-Like 9, Pseudogene 2 3
  • POM121 Transmembrane Nucleoporin-Like 9, Pseudogene 2
  • POM121 Membrane Glycoprotein-Like 1 Pseudogene 3
  • POM121-Like Protein 3
  • DKFZP434P211 3
  • UNQ2565 3

External Ids for POM121L9P Gene

Previous GeneCards Identifiers for POM121L9P Gene

  • GC22P022978
  • GC22P024649
  • GC22P007596

Summaries for POM121L9P Gene

Entrez Gene Summary for POM121L9P Gene

  • This locus is inferred to be a transcribed pseudogene based on the observation that protein homology is limited to the first of seven exons (indicated by alignment of AL117401.1 to the assembled human genome). This pattern suggests rapid turnover by the nonsense-mediated decay pathway. [provided by RefSeq, Jul 2008]

GeneCards Summary for POM121L9P Gene

POM121L9P (POM121 Transmembrane Nucleoporin Like 9, Pseudogene) is a Pseudogene.

Additional gene information for POM121L9P Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for POM121L9P Gene

Genomics for POM121L9P Gene

GeneHancer (GH) Regulatory Elements for POM121L9P Gene

Promoters and enhancers for POM121L9P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22I024270 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 29.7 +19.8 19840 2.5 HDGF FOXA2 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 POLR2B ZNF213 SPECC1L RPS10P29 SPECC1L-ADORA2A POM121L9P GGTLC4P LOC105372960
GH22I024242 Promoter/Enhancer 2 EPDnew FANTOM5 Ensembl ENCODE 26.5 -6.4 -6393 6.1 HDGF ARNT ZNF493 ZFP64 ARID4B SIN3A GLI4 ZBTB7B ZNF48 ZNF207 GGT5 ENSG00000272578 POM121L9P ZNF70 ENSG00000272973 SPECC1L SNRPD3 MIF-AS1 RN7SL268P SUSD2
GH22I024399 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 29.3 +150.3 150307 4.7 HDGF PKNOX1 SIN3A FEZF1 ZNF2 ATF7 FOS RUNX3 JUNB REST POM121L9P SPECC1L UPB1 ENSG00000228923 ADORA2A-AS1 GGT1 LOC105372960 SPECC1L-ADORA2A
GH22I024425 Promoter/Enhancer 2 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 23.2 +180.3 180337 13.9 HDGF PKNOX1 SMAD1 YY1 GLIS2 ZNF207 ZNF143 ATF7 RUNX3 RXRA ADORA2A PIR51261 SPECC1L-ADORA2A POM121L9P UPB1 ADORA2A-AS1 SPECC1L ENSG00000232545 SMARCB1 ZNF70
GH22I024419 Enhancer 1.1 Ensembl ENCODE dbSUPER 28.7 +168.6 168580 1.6 SOX13 TFAP4 FOXA2 SAP130 ARID4B ZIC2 RAD21 RARA TEAD3 POLR2A POM121L9P ADORA2A PIR51261 SPECC1L-ADORA2A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around POM121L9P on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the POM121L9P gene promoter:

Genomic Locations for POM121L9P Gene

Genomic Locations for POM121L9P Gene
chr22:24,251,621-24,265,525
(GRCh38/hg38)
Size:
13,905 bases
Orientation:
Plus strand
chr22:24,647,589-24,661,493
(GRCh37/hg19)

Genomic View for POM121L9P Gene

Genes around POM121L9P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
POM121L9P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for POM121L9P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for POM121L9P Gene

Proteins for POM121L9P Gene

Post-translational modifications for POM121L9P Gene

No Post-translational modifications

No data available for DME Specific Peptides for POM121L9P Gene

Domains & Families for POM121L9P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for POM121L9P Gene

Function for POM121L9P Gene

Phenotypes From GWAS Catalog for POM121L9P Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for POM121L9P Gene

Localization for POM121L9P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for POM121L9P Gene

Pathways & Interactions for POM121L9P Gene

SuperPathways for POM121L9P Gene

No Data Available

Interacting Proteins for POM121L9P Gene

Gene Ontology (GO) - Biological Process for POM121L9P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for POM121L9P Gene

Drugs & Compounds for POM121L9P Gene

No Compound Related Data Available

Transcripts for POM121L9P Gene

mRNA/cDNA for POM121L9P Gene

Unigene Clusters for POM121L9P Gene

POM121 transmembrane nucleoporin-like 9, pseudogene:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for POM121L9P Gene

No ASD Table

Relevant External Links for POM121L9P Gene

GeneLoc Exon Structure for
POM121L9P
ECgene alternative splicing isoforms for
POM121L9P

Expression for POM121L9P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for POM121L9P Gene

mRNA differential expression in normal tissues according to GTEx for POM121L9P Gene

This gene is overexpressed in Testis (x15.7).

NURSA nuclear receptor signaling pathways regulating expression of POM121L9P Gene:

POM121L9P

SOURCE GeneReport for Unigene cluster for POM121L9P Gene:

Hs.534980
genes like me logo Genes that share expression patterns with POM121L9P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for POM121L9P Gene

Orthologs for POM121L9P Gene

Evolution for POM121L9P Gene

ENSEMBL:
Gene Tree for POM121L9P (if available)
TreeFam:
Gene Tree for POM121L9P (if available)

No data available for Orthologs for POM121L9P Gene

Paralogs for POM121L9P Gene

No data available for Paralogs for POM121L9P Gene

Variants for POM121L9P Gene

Sequence variations from dbSNP and Humsavar for POM121L9P Gene

SNP ID Clin Chr 22 pos Variation AA Info Type
rs1000008659 -- 24,256,000(+) C/T intron_variant
rs1000284348 -- 24,263,833(+) C/A non_coding_transcript_variant
rs1000686937 -- 24,249,842(+) ACACACACA/ACACACA upstream_transcript_variant
rs1000982289 -- 24,254,529(+) C/T intron_variant
rs1001555564 -- 24,265,409(+) T/C non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for POM121L9P Gene

Variant ID Type Subtype PubMed ID
dgv4528n100 CNV gain 25217958
dgv8039n54 CNV gain 21841781
esv24290 CNV gain 19812545
esv2724041 CNV deletion 23290073
esv3575443 CNV gain 25503493
esv3893463 CNV gain 25118596
nsv1055830 CNV gain 25217958
nsv1110863 OTHER inversion 24896259
nsv1128861 CNV duplication 24896259
nsv1153105 CNV duplication 26484159
nsv483072 CNV loss 15286789
nsv526567 CNV gain 19592680
nsv7350 OTHER inversion 18451855
nsv834158 CNV gain 17160897
nsv953059 CNV deletion 24416366
nsv966093 CNV duplication 23825009
nsv9882 CNV gain+loss 18304495

Additional Variant Information for POM121L9P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
POM121L9P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for POM121L9P Gene

Disorders for POM121L9P Gene

Additional Disease Information for POM121L9P

No disorders were found for POM121L9P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for POM121L9P Gene

Publications for POM121L9P Gene

  1. Genome-wide association study identifies three novel susceptibility loci for severe Acne vulgaris. (PMID: 24927181) Navarini AA … Barker JN (Nature communications 2014) 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  3. The LIFEdb database in 2006. (PMID: 16381901) Mehrle A … Wiemann S (Nucleic acids research 2006) 3 58
  4. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 3 58
  5. From ORFeome to biology: a functional genomics pipeline. (PMID: 15489336) Wiemann S … Poustka A (Genome research 2004) 3 58

Products for POM121L9P Gene

Sources for POM121L9P Gene

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