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Aliases for POM121L10P Gene

Aliases for POM121L10P Gene

  • POM121 Transmembrane Nucleoporin Like 10, Pseudogene 2 3 5
  • POM121 Membrane Glycoprotein-Like 10, Pseudogene 2 3
  • POM121 Transmembrane Nucleoporin-Like 10, Pseudogene 2
  • POM121 Membrane Glycoprotein-Like 1 Pseudogene 3
  • POM121-Like 1 3

External Ids for POM121L10P Gene

Previous GeneCards Identifiers for POM121L10P Gene

  • GC22M023384
  • GC22M025041
  • GC22M024651
  • GC22M024663
  • GC22M026638
  • GC22M025283
  • GC22M025451
  • GC22M025632
  • GC22M025818
  • GC22M026003
  • GC22M026183
  • GC22M026363
  • GC22M026544

Summaries for POM121L10P Gene

GeneCards Summary for POM121L10P Gene

POM121L10P (POM121 Transmembrane Nucleoporin Like 10, Pseudogene) is a Pseudogene.

Additional gene information for POM121L10P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for POM121L10P Gene

Genomics for POM121L10P Gene

GeneHancer (GH) Regulatory Elements for POM121L10P Gene

Promoters and enhancers for POM121L10P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J024702 Enhancer 1.1 Ensembl ENCODE 5.2 -44.2 -44185 1.7 ELF3 CBFA2T2 ZNF121 ZSCAN21 TFE3 SP1 PPARG ZNF644 KAT8 GLIS2 ENSG00000237601 POM121L10P LOC105372962 ENSG00000282012
GH22J024630 Enhancer 0.7 ENCODE 6.8 +27.8 27828 1.9 CBFA2T2 CEBPG SMARCA4 CAVIN1 CEBPA GATAD2A ATF1 PKNOX1 ZNF740 ZNF341 ENSG00000284233 BCRP3 ENSG00000272977 SPECC1L CRYBB2P1 POM121L10P ENSG00000230947
GH22J024690 Enhancer 0.5 ENCODE dbSUPER 4.7 -32.1 -32091 1.1 ZNF623 LOC100421614 SGSM1 POM121L10P PIR50718 ENSG00000282012 ARL5AP4
GH22J024650 Promoter 0.8 Ensembl 0.4 +7.9 7946 0.4 REST CTCF ZNF654 RB1 GC22P024779 ENSG00000284070 PIR37964 ENSG00000284128 POM121L10P PIRC111 BCRP3
GH22J024646 Enhancer 0.3 Ensembl 0.4 +13.1 13146 1.6 ZNF121 ENSG00000284128 GC22M027010 PIR52227 ENSG00000272977 ENSG00000284070 PIRC111 BCRP3 POM121L10P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around POM121L10P on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the POM121L10P gene promoter:
  • E2F
  • E2F-1
  • E2F-2
  • E2F-3a
  • E2F-4
  • E2F-5
  • E47
  • GATA-2
  • Hand1
  • Tal-1beta

Genomic Locations for POM121L10P Gene

Genomic Locations for POM121L10P Gene
chr22:24,645,166-24,659,147
(GRCh38/hg38)
Size:
13,982 bases
Orientation:
Minus strand
chr22:25,041,133-25,055,114
(GRCh37/hg19)
Size:
13,982 bases
Orientation:
Minus strand

Genomic View for POM121L10P Gene

Genes around POM121L10P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
POM121L10P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for POM121L10P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for POM121L10P Gene

Proteins for POM121L10P Gene

Post-translational modifications for POM121L10P Gene

No Post-translational modifications

No data available for DME Specific Peptides for POM121L10P Gene

Domains & Families for POM121L10P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for POM121L10P Gene

Function for POM121L10P Gene

Phenotypes From GWAS Catalog for POM121L10P Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for POM121L10P Gene

Localization for POM121L10P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for POM121L10P Gene

Pathways & Interactions for POM121L10P Gene

PathCards logo

SuperPathways for POM121L10P Gene

No Data Available

Interacting Proteins for POM121L10P Gene

Gene Ontology (GO) - Biological Process for POM121L10P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for POM121L10P Gene

Drugs & Compounds for POM121L10P Gene

No Compound Related Data Available

Transcripts for POM121L10P Gene

mRNA/cDNA for POM121L10P Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Unigene Clusters for POM121L10P Gene

POM121 transmembrane nucleoporin-like 10, pseudogene:
Representative Sequences:

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for POM121L10P Gene

No ASD Table

Relevant External Links for POM121L10P Gene

GeneLoc Exon Structure for
POM121L10P
ECgene alternative splicing isoforms for
POM121L10P

Expression for POM121L10P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for POM121L10P Gene

mRNA differential expression in normal tissues according to GTEx for POM121L10P Gene

This gene is overexpressed in Testis (x31.0).

NURSA nuclear receptor signaling pathways regulating expression of POM121L10P Gene:

POM121L10P

SOURCE GeneReport for Unigene cluster for POM121L10P Gene:

Hs.531306
genes like me logo Genes that share expression patterns with POM121L10P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for POM121L10P Gene

Orthologs for POM121L10P Gene

Evolution for POM121L10P Gene

ENSEMBL:
Gene Tree for POM121L10P (if available)
TreeFam:
Gene Tree for POM121L10P (if available)

No data available for Orthologs for POM121L10P Gene

Paralogs for POM121L10P Gene

No data available for Paralogs for POM121L10P Gene

Variants for POM121L10P Gene

Sequence variations from dbSNP and Humsavar for POM121L10P Gene

SNP ID Clin Chr 22 pos Variation AA Info Type
rs1000067496 -- 24,658,337(-) A/C non_coding_transcript_variant
rs1000580334 -- 24,653,140(-) T/C non_coding_transcript_variant
rs1000954438 -- 24,657,123(-) A/G non_coding_transcript_variant
rs1001523494 -- 24,657,237(-) A/G non_coding_transcript_variant
rs1001548018 -- 24,650,324(-) G/A non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for POM121L10P Gene

Variant ID Type Subtype PubMed ID
dgv4528n100 CNV gain 25217958
esv2530395 CNV loss 19546169
esv25356 CNV gain 19812545
esv2724041 CNV deletion 23290073
esv2724068 CNV deletion 23290073
esv3575443 CNV gain 25503493
esv3647437 CNV loss 21293372
nsv1055420 CNV loss 25217958
nsv1110863 OTHER inversion 24896259
nsv1132573 CNV duplication 24896259
nsv1145846 CNV duplication 26484159
nsv1149688 CNV duplication 26484159
nsv7350 OTHER inversion 18451855
nsv962775 CNV duplication 23825009
nsv9884 CNV gain+loss 18304495

Additional Variant Information for POM121L10P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
POM121L10P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for POM121L10P Gene

Disorders for POM121L10P Gene

Additional Disease Information for POM121L10P

No disorders were found for POM121L10P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for POM121L10P Gene

Publications for POM121L10P Gene

  1. Genome-wide association study identifies three novel susceptibility loci for severe Acne vulgaris. (PMID: 24927181) Navarini AA … Barker JN (Nature communications 2014) 3 58
  2. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 3 58
  3. One-megabase sequence analysis of the human immunoglobulin lambda gene locus. (PMID: 9074928) Kawasaki K … Shimizu N (Genome research 1997) 3 58

Products for POM121L10P Gene

Sources for POM121L10P Gene

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