Aliases for POLR2LP1 Gene

Aliases for POLR2LP1 Gene

  • RNA Polymerase II Subunit L Pseudogene 1 2 3 5
  • Polymerase (RNA) II (DNA Directed) Polypeptide L Pseudogene 2 3
  • Polymerase (RNA) II Subunit L Pseudogene 1 3
  • AB023060.6 2
  • POLR2LP1 5
  • POLR2LP 3

External Ids for POLR2LP1 Gene

Previous HGNC Symbols for POLR2LP1 Gene

  • POLR2LP

Previous GeneCards Identifiers for POLR2LP1 Gene

  • GC06P032297
  • GC06P032486
  • GC06P032591
  • GC06P033376
  • GC06P031142
  • GC06P031145
  • GC06P031276
  • GC06P031277
  • GC06P031433
  • GC06P032075

Summaries for POLR2LP1 Gene

GeneCards Summary for POLR2LP1 Gene

POLR2LP1 (RNA Polymerase II Subunit L Pseudogene 1) is a Pseudogene.

Additional gene information for POLR2LP1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for POLR2LP1 Gene

Genomics for POLR2LP1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for POLR2LP1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J031139 Promoter/Enhancer 1 EPDnew Ensembl ENCODE 600.7 -1.3 -1299 1.7 TEAD4 ZBTB17 FOS HLF ZBTB6 PSORS1C2 HSALNG0049237 POLR2LP1 piR-32214-583 CCHCR1 PSORS1C3 POU5F1 HCG22 ENSG00000272501 ENSG00000272221
GH06J031140 Promoter/Enhancer 0.5 EPDnew Ensembl 600.7 +0.2 174 0.2 PSORS1C2 POLR2LP1 piR-32214-583 POU5F1 HCG22 CCHCR1 lnc-PSORS1C2-1 MN298114-200
GH06J031143 Enhancer 0.2 Ensembl 600.7 -0.2 -226 0.2 PSORS1C2 POLR2LP1 piR-32214-583 CCHCR1 HCG22 MN298114-200
GH06J031142 Enhancer 0.6 Ensembl ENCODE 0.7 +2.1 2117 2.1 CEBPB POLR2A SMARCA4 ZNF652 PSORS1C2 CCHCR1 HCG22 ENSG00000271581 POLR2LP1 lnc-PSORS1C2-1 MN298114-200
GH06J031144 Enhancer 0.2 ENCODE 0.7 +4.1 4070 1.2 lnc-PSORS1C2-1 CCHCR1 PSORS1C3 CDSN PSORS1C1 C6orf15 ENSG00000272501 POU5F1 MUCL3 HCG22
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around POLR2LP1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for POLR2LP1 Gene

Genomic Locations for POLR2LP1 Gene
chr6:31,140,727-31,140,913
(GRCh38/hg38)
Size:
187 bases
Orientation:
Plus strand
chr6:31,108,504-31,108,690
(GRCh37/hg19)
Size:
187 bases
Orientation:
Plus strand

Genomic View for POLR2LP1 Gene

Genes around POLR2LP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
POLR2LP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for POLR2LP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for POLR2LP1 Gene

Proteins for POLR2LP1 Gene

Post-translational modifications for POLR2LP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for POLR2LP1 Gene

Domains & Families for POLR2LP1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for POLR2LP1 Gene

Function for POLR2LP1 Gene

Phenotypes From GWAS Catalog for POLR2LP1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for POLR2LP1 Gene

Localization for POLR2LP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for POLR2LP1 Gene

Pathways & Interactions for POLR2LP1 Gene

PathCards logo

SuperPathways for POLR2LP1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for POLR2LP1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for POLR2LP1 Gene

Drugs & Compounds for POLR2LP1 Gene

No Compound Related Data Available

Transcripts for POLR2LP1 Gene

mRNA/cDNA for POLR2LP1 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for POLR2LP1 Gene

No ASD Table

Relevant External Links for POLR2LP1 Gene

GeneLoc Exon Structure for
POLR2LP1

Expression for POLR2LP1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for POLR2LP1 Gene

Orthologs for POLR2LP1 Gene

Evolution for POLR2LP1 Gene

ENSEMBL:
Gene Tree for POLR2LP1 (if available)
TreeFam:
Gene Tree for POLR2LP1 (if available)

No data available for Orthologs for POLR2LP1 Gene

Paralogs for POLR2LP1 Gene

No data available for Paralogs for POLR2LP1 Gene

Variants for POLR2LP1 Gene

Additional Variant Information for POLR2LP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
POLR2LP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for POLR2LP1 Gene

Disorders for POLR2LP1 Gene

No disorders were found for POLR2LP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for POLR2LP1 Gene

Publications for POLR2LP1 Gene

  1. A whole-genome association study of major determinants for allopurinol-related Stevens-Johnson syndrome and toxic epidermal necrolysis in Japanese patients. (PMID: 21912425) Tohkin M … Japan Pharmacogenomics Data Science Consortium (The pharmacogenomics journal 2013) 3

Products for POLR2LP1 Gene

Sources for POLR2LP1 Gene