POC1B-AS1 Gene (RNA Gene)

POC1B Antisense RNA 1

GC12P089527
GIFtS:
9
See more...

Aliases for POC1B-AS1 Gene

Data sources for POC1B-AS1 Gene:

Subcategory (RNA class) for POC1B-AS1 Gene

lncRNA

Aliases for POC1B-AS1 Gene

External Ids for POC1B-AS1 Gene

Previous GeneCards Identifiers for POC1B-AS1 Gene

  • GC00U936753

Summaries for POC1B-AS1 Gene

GeneCards Summary for POC1B-AS1 Gene

POC1B-AS1 (POC1B Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for POC1B-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for POC1B-AS1 Gene

Genomics for POC1B-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for POC1B-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around POC1B-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for POC1B-AS1 Gene

Latest Assembly
chr12:89,524,594-89,548,005
(GRCh38/hg38)
Size:
23,412 bases
Orientation:
Plus strand

Previous Assembly
chr12:89,919,347-89,935,319
(GRCh37/hg19 by Entrez Gene)
Size:
15,973 bases
Orientation:
Plus strand

chr12:89,919,431-89,934,079
(GRCh37/hg19 by Ensembl)
Size:
14,649 bases
Orientation:
Plus strand

Genomic View for POC1B-AS1 Gene

Genes around POC1B-AS1 on UCSC Golden Path with GeneCards custom track
POC1B-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
POC1B-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for POC1B-AS1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for POC1B-AS1 Gene

Proteins for POC1B-AS1 Gene

Products:

  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for POC1B-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for POC1B-AS1 Gene

Domains & Families for POC1B-AS1 Gene

Gene Families for POC1B-AS1 Gene

HGNC:
genes like me logo Genes that share domains with POC1B-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for POC1B-AS1 Gene

Function for POC1B-AS1 Gene

Products:

  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for POC1B-AS1 Gene

Localization for POC1B-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for POC1B-AS1 Gene

Pathways & Interactions for POC1B-AS1 Gene

PathCards logo

SuperPathways for POC1B-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for POC1B-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for POC1B-AS1 Gene

Drugs & Compounds for POC1B-AS1 Gene

Products:

  1. Drug products for research
No Compound Related Data Available

Transcripts for POC1B-AS1 Gene

Products:

  1. CRISPR products for research
  2. miRNA products for research
  3. Inhibitory RNAs for research
  4. Clone products for research

Non-coding RNA (ncRNA) Transcripts from RNAcentral for POC1B-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000EEC4E4_9606 lncRNA 8158 1

Ensembl: ENST00000605233 (view in UCSC) ,

URS0000EF6895_9606 lncRNA 2139 1

Ensembl: ENST00000655646 (view in UCSC) ,

URS0000BC4596_9606 lncRNA 1662 1

RefSeq: NR_146294,

URS00007703DB_9606 lncRNA 8041 2

LncBook: HSALNT0192681,

LNCipedia: POC1B-AS1:38,

URS0000D56E93_9606 lncRNA 5267 2

LncBook: HSALNT0192682,

LNCipedia: POC1B-AS1:40,

POC1B-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for POC1B-AS1 Gene

No ASD Table

Relevant External Links for POC1B-AS1 Gene

GeneLoc Exon Structure for
POC1B-AS1

No data available for mRNA/cDNA for POC1B-AS1 Gene

Expression for POC1B-AS1 Gene

Products:

  1. Primer products for research
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for POC1B-AS1 Gene

Orthologs for POC1B-AS1 Gene

Evolution for POC1B-AS1 Gene

ENSEMBL:
Gene Tree for POC1B-AS1 (if available)
TreeFam:
Gene Tree for POC1B-AS1 (if available)

No data available for Orthologs for POC1B-AS1 Gene

Paralogs for POC1B-AS1 Gene

No data available for Paralogs for POC1B-AS1 Gene

Variants for POC1B-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for POC1B-AS1 Gene

SNP ID Clinical significance and condition Chr 12 pos Variation AA Info Type
855489 Uncertain Significance: not provided 89,525,886(+) C/T
NM_172240.3(POC1B):c.10G>A (p.Ala4Thr) 		MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for POC1B-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for POC1B-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
POC1B-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for POC1B-AS1 Gene

Disorders for POC1B-AS1 Gene

Additional Disease Information for POC1B-AS1

Atlas
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
Open Targets Platform
Open Targets Platform

No disorders were found for POC1B-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for POC1B-AS1 Gene

Publications for POC1B-AS1 Gene

  1. CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells. (PMID: 27980086) Liu SJ … Lim DA (Science (New York, N.Y.) 2017) 2 3

No data available for Mastermind for POC1B-AS1 Gene

Products for POC1B-AS1 Gene

Sources for POC1B-AS1 Gene