Aliases for POC1B-AS1 Gene

Data sources for POC1B-AS1 Gene:

Subcategory (RNA class) for POC1B-AS1 Gene

lncRNA

Aliases for POC1B-AS1 Gene

External Ids for POC1B-AS1 Gene

Previous GeneCards Identifiers for POC1B-AS1 Gene

  • GC00U936753

Summaries for POC1B-AS1 Gene

GeneCards Summary for POC1B-AS1 Gene

POC1B-AS1 (POC1B Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for POC1B-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for POC1B-AS1 Gene

Genomics for POC1B-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for POC1B-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around POC1B-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for POC1B-AS1 Gene

Latest Assembly
chr12:89,524,594-89,548,005
(GRCh38/hg38)
Size:
23,412 bases
Orientation:
Plus strand

Previous Assembly
chr12:89,919,347-89,935,319
(GRCh37/hg19 by Entrez Gene)
Size:
15,973 bases
Orientation:
Plus strand

chr12:89,919,431-89,934,079
(GRCh37/hg19 by Ensembl)
Size:
14,649 bases
Orientation:
Plus strand

Genomic View for POC1B-AS1 Gene

Genes around POC1B-AS1 on UCSC Golden Path with GeneCards custom track
POC1B-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
POC1B-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for POC1B-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for POC1B-AS1 Gene

Proteins for POC1B-AS1 Gene

Post-translational modifications for POC1B-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for POC1B-AS1 Gene

Domains & Families for POC1B-AS1 Gene

Gene Families for POC1B-AS1 Gene

genes like me logo Genes that share domains with POC1B-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for POC1B-AS1 Gene

Function for POC1B-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for POC1B-AS1 Gene

Localization for POC1B-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for POC1B-AS1 Gene

Pathways & Interactions for POC1B-AS1 Gene

PathCards logo

SuperPathways for POC1B-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for POC1B-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for POC1B-AS1 Gene

Drugs & Compounds for POC1B-AS1 Gene

No Compound Related Data Available

Transcripts for POC1B-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for POC1B-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000EEC4E4_9606 lncRNA 8158 1

Ensembl: ENST00000605233 (view in UCSC) ,

URS0000EF6895_9606 lncRNA 2139 1

Ensembl: ENST00000655646 (view in UCSC) ,

URS0000BC4596_9606 lncRNA 1662 1

RefSeq: NR_146294,

URS00007703DB_9606 lncRNA 8041 2

LncBook: HSALNT0192681,

LNCipedia: POC1B-AS1:38,

URS0000D56E93_9606 lncRNA 5267 2

LncBook: HSALNT0192682,

LNCipedia: POC1B-AS1:40,

POC1B-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for POC1B-AS1 Gene

No ASD Table

Relevant External Links for POC1B-AS1 Gene

GeneLoc Exon Structure for
POC1B-AS1

No data available for mRNA/cDNA for POC1B-AS1 Gene

Expression for POC1B-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for POC1B-AS1 Gene

Orthologs for POC1B-AS1 Gene

Evolution for POC1B-AS1 Gene

ENSEMBL:
Gene Tree for POC1B-AS1 (if available)
TreeFam:
Gene Tree for POC1B-AS1 (if available)

No data available for Orthologs for POC1B-AS1 Gene

Paralogs for POC1B-AS1 Gene

No data available for Paralogs for POC1B-AS1 Gene

Variants for POC1B-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for POC1B-AS1 Gene

SNP ID Clinical significance and condition Chr 12 pos Variation AA Info Type
855489 Uncertain Significance: not provided 89,525,886(+) C/T
NM_172240.3(POC1B):c.10G>A (p.Ala4Thr)
MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for POC1B-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for POC1B-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
POC1B-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for POC1B-AS1 Gene

Disorders for POC1B-AS1 Gene

Additional Disease Information for POC1B-AS1

No disorders were found for POC1B-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for POC1B-AS1 Gene

Publications for POC1B-AS1 Gene

  1. CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells. (PMID: 27980086) Liu SJ … Lim DA (Science (New York, N.Y.) 2017) 2 3

No data available for Mastermind for POC1B-AS1 Gene

Products for POC1B-AS1 Gene

Sources for POC1B-AS1 Gene