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Aliases for PNMA6E Gene

Aliases for PNMA6E Gene

  • PNMA Family Member 6E 2 3 5
  • Paraneoplastic Ma Antigen Family Member 6E 2

External Ids for PNMA6E Gene

Summaries for PNMA6E Gene

GeneCards Summary for PNMA6E Gene

PNMA6E (PNMA Family Member 6E) is a Protein Coding gene. An important paralog of this gene is PNMA6F.

Additional gene information for PNMA6E Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PNMA6E Gene

Genomics for PNMA6E Gene

GeneHancer (GH) Regulatory Elements for PNMA6E Gene

Promoters and enhancers for PNMA6E Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XI153380 Enhancer 1.1 Ensembl ENCODE 0.4 +19.6 19590 1.8 HDAC1 PKNOX1 ATF1 FOXA2 RB1 BMI1 ZNF48 RAD21 GLIS2 ZNF302 HCFC1 ZNF275 PNMA6E GC0XP153357
GH0XI153383 Enhancer 0.7 FANTOM5 0.4 +18.0 18014 0.3 ZNF493 ZNF140 ZNF266 ZNF155 ZNF791 ZNF157 ADNP ZNF621 ZNF645 ZNF488 HCFC1 EMD LOC105373383 TMEM187 MECP2 PNMA6B SLC6A8 ZNF275 PNMA6E GC0XP153357
GH0XI153381 Enhancer 0.8 FANTOM5 0.3 +21.3 21261 0.3 HDAC1 PKNOX1 ATF1 NFIB NFRKB ZBTB40 ZNF766 GATA2 CREM CEBPB ZNF275 GC0XP153357 PNMA6E
GH0XI153382 Enhancer 0.6 ENCODE 0.3 +20.7 20682 0.2 ZNF639 ATF1 ZNF197 NFRKB BACH1 ZNF644 ZNF395 GATA3 ZNF766 CUX1 PNMA6E GC0XP153357
GH0XI153369 Enhancer 0.5 ENCODE 0.3 +30.3 30341 2.5 ATF4 PRDM10 ATF2 NR2F2 ZNF275 GC0XP153357 PNMA6E
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PNMA6E on UCSC Golden Path with GeneCards custom track

Genomic Locations for PNMA6E Gene

Genomic Locations for PNMA6E Gene
chrX:153,395,640-153,401,420
(GRCh38/hg38)
Size:
5,781 bases
Orientation:
Minus strand
chrX:152,662,421-152,664,307
(GRCh37/hg19)

Genomic View for PNMA6E Gene

Genes around PNMA6E on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PNMA6E Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PNMA6E Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for PNMA6E Gene

Proteins for PNMA6E Gene

  • Protein details for PNMA6E Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A0A0J9YXQ4-PMA6E_HUMAN
    Recommended name:
    Paraneoplastic antigen Ma6E
    Protein Accession:
    A0A0J9YXQ4

    Protein attributes for PNMA6E Gene

    Size:
    647 amino acids
    Molecular mass:
    65155 Da
    Quaternary structure:
    No Data Available

neXtProt entry for PNMA6E Gene

Post-translational modifications for PNMA6E Gene

No Post-translational modifications

Other Protein References for PNMA6E Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for PNMA6E Gene

Domains & Families for PNMA6E Gene

Gene Families for PNMA6E Gene

Protein Domains for PNMA6E Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with PNMA6E: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PNMA6E Gene

Function for PNMA6E Gene

Phenotypes for PNMA6E Gene

genes like me logo Genes that share phenotypes with PNMA6E: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PNMA6E Gene

Localization for PNMA6E Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PNMA6E Gene

Pathways & Interactions for PNMA6E Gene

SuperPathways for PNMA6E Gene

No Data Available

Interacting Proteins for PNMA6E Gene

Gene Ontology (GO) - Biological Process for PNMA6E Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PNMA6E Gene

Drugs & Compounds for PNMA6E Gene

No Compound Related Data Available

Transcripts for PNMA6E Gene

mRNA/cDNA for PNMA6E Gene

(2) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for PNMA6E Gene

No ASD Table

Relevant External Links for PNMA6E Gene

GeneLoc Exon Structure for
PNMA6E
ECgene alternative splicing isoforms for
PNMA6E

Expression for PNMA6E Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PNMA6E Gene

Orthologs for PNMA6E Gene

Evolution for PNMA6E Gene

ENSEMBL:
Gene Tree for PNMA6E (if available)
TreeFam:
Gene Tree for PNMA6E (if available)

No data available for Orthologs for PNMA6E Gene

Paralogs for PNMA6E Gene

Pseudogenes.org Pseudogenes for PNMA6E Gene

genes like me logo Genes that share paralogs with PNMA6E: view

Variants for PNMA6E Gene

Additional Variant Information for PNMA6E Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PNMA6E

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for PNMA6E Gene

Disorders for PNMA6E Gene

Additional Disease Information for PNMA6E

No disorders were found for PNMA6E Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PNMA6E Gene

Publications for PNMA6E Gene

  1. Improving GENCODE reference gene annotation using a high-stringency proteogenomics workflow. (PMID: 27250503) Wright JC … Harrow J (Nature communications 2016) 2 3 58
  2. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross MT … Bentley DR (Nature 2005) 4 58

Products for PNMA6E Gene

Sources for PNMA6E Gene

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