Aliases for PLEKHM1P1 Gene

Aliases for PLEKHM1P1 Gene

  • Pleckstrin Homology And RUN Domain Containing M1 Pseudogene 1 2 3 5
  • Pleckstrin Homology Domain Containing, Family M (With RUN Domain) Member 1 Pseudogene 2 3
  • PLEKHM1P 3

External Ids for PLEKHM1P1 Gene

Previous HGNC Symbols for PLEKHM1P1 Gene

  • PLEKHM1P

Summaries for PLEKHM1P1 Gene

GeneCards Summary for PLEKHM1P1 Gene

PLEKHM1P1 (Pleckstrin Homology And RUN Domain Containing M1 Pseudogene 1) is a Pseudogene.

Additional gene information for PLEKHM1P1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PLEKHM1P1 Gene

Genomics for PLEKHM1P1 Gene

GeneHancer (GH) Regulatory Elements for PLEKHM1P1 Gene

Promoters and enhancers for PLEKHM1P1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PLEKHM1P1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PLEKHM1P1 Gene

Genomic Locations for PLEKHM1P1 Gene
chr17:64,779,259-64,837,184
(GRCh38/hg38)
Size:
57,926 bases
Orientation:
Minus strand
chr17:62,775,377-62,833,302
(GRCh37/hg19)
Size:
57,926 bases
Orientation:
Minus strand

Genomic View for PLEKHM1P1 Gene

Genes around PLEKHM1P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PLEKHM1P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PLEKHM1P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PLEKHM1P1 Gene

Proteins for PLEKHM1P1 Gene

Post-translational modifications for PLEKHM1P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PLEKHM1P1 Gene

Domains & Families for PLEKHM1P1 Gene

Suggested Antigen Peptide Sequences for PLEKHM1P1 Gene

GenScript: Design optimal peptide antigens:
  • Putative pleckstrin homology domain-containing family M member 1P (PKHMP_HUMAN)

No data available for Gene Families , Protein Domains , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PLEKHM1P1 Gene

Function for PLEKHM1P1 Gene

Phenotypes From GWAS Catalog for PLEKHM1P1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PLEKHM1P1 Gene

Localization for PLEKHM1P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PLEKHM1P1 Gene

Pathways & Interactions for PLEKHM1P1 Gene

PathCards logo

SuperPathways for PLEKHM1P1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for PLEKHM1P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PLEKHM1P1 Gene

Drugs & Compounds for PLEKHM1P1 Gene

(3) Additional Compounds for PLEKHM1P1 Gene - From: HMDB

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
Diglycerides Group B
  • 1-Myristoyl-2-eicosadienoyl-sn-glycerol
  • DAG(14:0/20:2)
  • DAG(14:0/20:2N6)
  • DAG(14:0/20:2W6)
  • DAG(34:2)
Diglycerides Group C
  • 1-Stearoyl-2-palmitoyl-sn-glycerol
  • DAG(18:0/16:0)
  • DAG(34:0)
  • DG(18:0/16:0)
  • DG(34:0)
Diglycerides Group D
  • 1,2-Di-(4Z,7Z,10Z,13Z,16Z,19Z-docosahexaenoyl)-sn-glycerol
  • 1,2-Didocosahexaenoyl-sn-glycerol
  • DAG(22:6/22:6)
  • DAG(22:6N3/22:6N3)
  • DAG(22:6OMEGA3/22:6OMEGA3)
genes like me logo Genes that share compounds with PLEKHM1P1: view

Transcripts for PLEKHM1P1 Gene

mRNA/cDNA for PLEKHM1P1 Gene

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for PLEKHM1P1 Gene

No ASD Table

Relevant External Links for PLEKHM1P1 Gene

GeneLoc Exon Structure for
PLEKHM1P1
ECgene alternative splicing isoforms for
PLEKHM1P1

Expression for PLEKHM1P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of PLEKHM1P1 Gene:

PLEKHM1P1
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PLEKHM1P1 Gene

Orthologs for PLEKHM1P1 Gene

Evolution for PLEKHM1P1 Gene

ENSEMBL:
Gene Tree for PLEKHM1P1 (if available)
TreeFam:
Gene Tree for PLEKHM1P1 (if available)

No data available for Orthologs for PLEKHM1P1 Gene

Paralogs for PLEKHM1P1 Gene

No data available for Paralogs for PLEKHM1P1 Gene

Variants for PLEKHM1P1 Gene

Sequence variations from dbSNP and Humsavar for PLEKHM1P1 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000155323 -- 64,807,776(-) T/C intron_variant
rs1000166211 -- 64,834,909(-) C/T intron_variant
rs1000251786 -- 64,821,676(-) G/C intron_variant
rs1000254602 -- 64,784,403(-) C/T downstream_transcript_variant
rs1000260761 -- 64,827,403(-) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for PLEKHM1P1 Gene

Variant ID Type Subtype PubMed ID
dgv3274n100 CNV gain 25217958
dgv44n68 CNV loss 17160897
dgv45n68 CNV loss 17160897
esv24547 CNV gain 19812545
esv2670296 CNV deletion 23128226
esv3641030 CNV loss 21293372
esv3641032 CNV loss 21293372
esv3641033 CNV loss 21293372
nsv1066765 CNV gain 25217958
nsv1120054 OTHER inversion 24896259
nsv469875 CNV loss 16826518
nsv471504 CNV gain 19718026
nsv962361 CNV duplication 23825009
nsv978454 CNV duplication 23825009
nsv978455 CNV duplication 23825009

Additional Variant Information for PLEKHM1P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PLEKHM1P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for PLEKHM1P1 Gene

Disorders for PLEKHM1P1 Gene

Additional Disease Information for PLEKHM1P1

No disorders were found for PLEKHM1P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PLEKHM1P1 Gene

Publications for PLEKHM1P1 Gene

  1. VIRMA mediates preferential m6A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. (PMID: 29507755) Yue Y … Liu J (Cell discovery 2018) 3 56
  2. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A … Hentze MW (Cell 2012) 3 56
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 56
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

Products for PLEKHM1P1 Gene

Sources for PLEKHM1P1 Gene