Aliases for PLCH1-AS1 Gene

Subcategory (RNA class) for PLCH1-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for PLCH1-AS1 Gene

  • PLCH1 Antisense RNA 1 2 3 5
  • PLCH1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • PLCH1-AS1 2 168
  • NONHSAG036462 92
  • HSALNG0030015 167

External Ids for PLCH1-AS1 Gene

Previous GeneCards Identifiers for PLCH1-AS1 Gene

  • GC00U933315
  • GC03P155167

Summaries for PLCH1-AS1 Gene

GeneCards Summary for PLCH1-AS1 Gene

PLCH1-AS1 (PLCH1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for PLCH1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PLCH1-AS1 Gene

Genomics for PLCH1-AS1 Gene

GeneHancer (GH) Regulatory Elements for PLCH1-AS1 Gene

Promoters and enhancers for PLCH1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J155416 Enhancer 0.8 Ensembl ENCODE 11.9 -31.6 -31584 2.4 EP300 TCF12 RFX1 CTBP1 MXI1 SMC3 GATA3 FOS FOSL2 NR3C1 PLCH1-AS1 SLC33A1 ENSG00000243518 lnc-C3orf33-6 ENSG00000242152 lnc-C3orf33-5 PLCH1
GH03J155701 Enhancer 0.9 Ensembl ENCODE 10.2 +254.2 254217 4.4 CTCF ZIC2 REST RAD21 TRIM22 ATF2 SMC3 ZNF341 OSR2 MYNN PLCH1 ENSG00000214919 PLCH1-AS1 SLC33A1 piR-33123-008
GH03J155619 Enhancer 0.7 Ensembl ENCODE 10.3 +170.8 170816 2.8 TEAD4 HDAC2 YY1 RARA RAD21 SMARCA4 JUND NR2F6 CHD7 SUZ12 piR-61240-184 PLCH1-AS1 PLCH1 SETP14 SLC33A1 lnc-C3orf33-3
GH03J155390 Enhancer 0.7 Ensembl ENCODE 11.2 -57.7 -57693 2.2 ZNF217 REST RFX1 CTBP1 NR3C1 EZH2 JUND ESR1 PLCH1-AS1 RF00017-4147 piR-50444-323 PLCH1
GH03J155553 Enhancer 0.8 ENCODE 10.1 +105.8 105838 3.4 TCF12 EP300 TEAD1 CTCF GABPA SAP130 ARNT MEF2B SPI1 ATF3 PLCH1-AS1 PLCH1-AS2 PLCH1 piR-61291-011 piR-43107-224 lnc-C3orf33-3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PLCH1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PLCH1-AS1 Gene

Genomic Locations for PLCH1-AS1 Gene
chr3:155,449,184-155,457,754
(GRCh38/hg38)
Size:
8,571 bases
Orientation:
Plus strand
chr3:155,166,973-155,175,542
(GRCh37/hg19)
Size:
8,570 bases
Orientation:
Plus strand

Genomic View for PLCH1-AS1 Gene

Genes around PLCH1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PLCH1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PLCH1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for PLCH1-AS1 Gene

Proteins for PLCH1-AS1 Gene

Post-translational modifications for PLCH1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PLCH1-AS1 Gene

Domains & Families for PLCH1-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PLCH1-AS1 Gene

Function for PLCH1-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PLCH1-AS1 Gene

Localization for PLCH1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PLCH1-AS1 Gene

Pathways & Interactions for PLCH1-AS1 Gene

PathCards logo

SuperPathways for PLCH1-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for PLCH1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PLCH1-AS1 Gene

Drugs & Compounds for PLCH1-AS1 Gene

No Compound Related Data Available

Transcripts for PLCH1-AS1 Gene

mRNA/cDNA for PLCH1-AS1 Gene

2 RNACentral transcripts :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
2 LncBook transcripts :
1 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for PLCH1-AS1 Gene

No ASD Table

Relevant External Links for PLCH1-AS1 Gene

GeneLoc Exon Structure for
PLCH1-AS1

Expression for PLCH1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for PLCH1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for PLCH1-AS1 Gene

This gene is overexpressed in Brain - Putamen (basal ganglia) (x21.0), Brain - Caudate (basal ganglia) (x16.2), and Brain - Nucleus accumbens (basal ganglia) (x4.6).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for PLCH1-AS1

genes like me logo Genes that share expression patterns with PLCH1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PLCH1-AS1 Gene

Orthologs for PLCH1-AS1 Gene

Evolution for PLCH1-AS1 Gene

ENSEMBL:
Gene Tree for PLCH1-AS1 (if available)
TreeFam:
Gene Tree for PLCH1-AS1 (if available)

No data available for Orthologs for PLCH1-AS1 Gene

Paralogs for PLCH1-AS1 Gene

No data available for Paralogs for PLCH1-AS1 Gene

Variants for PLCH1-AS1 Gene

Additional Variant Information for PLCH1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PLCH1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for PLCH1-AS1 Gene

Disorders for PLCH1-AS1 Gene

Additional Disease Information for PLCH1-AS1

No disorders were found for PLCH1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PLCH1-AS1 Gene

Publications for PLCH1-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for PLCH1-AS1 Gene

Sources for PLCH1-AS1 Gene