Aliases for PLCE1-AS2 Gene

Subcategory (RNA class) for PLCE1-AS2 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for PLCE1-AS2 Gene

  • PLCE1 Antisense RNA 2 2 3 5
  • PLCE1-AS2 2 170
  • HSALNG0079788 169
  • NONHSAG006557 94

External Ids for PLCE1-AS2 Gene

Summaries for PLCE1-AS2 Gene

GeneCards Summary for PLCE1-AS2 Gene

PLCE1-AS2 (PLCE1 Antisense RNA 2) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for PLCE1-AS2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PLCE1-AS2 Gene

Genomics for PLCE1-AS2 Gene

GeneHancer (GH) Regulatory Elements for PLCE1-AS2 Gene

Promoters and enhancers for PLCE1-AS2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J094108 Enhancer 0.4 Ensembl ENCODE 750.6 +0.3 252 0.5 FOS ENSG00000231575 PLCE1-AS2 lnc-NOC3L-7 PLCE1
GH10J094085 Enhancer 0.4 Ensembl 12 +23.0 23013 0.8 PRDM10 OSR2 GATA3 JUND ENSG00000231575 PLCE1-AS2 lnc-NOC3L-7 RF00019-011 RNY4P26 PLCE1
GH10J094129 Enhancer 0.3 Ensembl 12.2 -20.9 -20887 1.4 FOS JUND ENSG00000231575 PLCE1-AS2 RNU6-657P HDAC1P1 PLCE1
GH10J094133 Enhancer 0.3 Ensembl 12.2 -24.9 -24883 1 RCOR1 GATA3 ENSG00000231575 PLCE1-AS2 RNU6-657P HDAC1P1 PLCE1
GH10J094142 Enhancer 0.3 FANTOM5 11.6 -33.6 -33589 0.1 ZNF513 ENSG00000231575 PLCE1-AS2 HDAC1P1 RF00026-161 RNU6-657P PLCE1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PLCE1-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PLCE1-AS2 Gene

Genomic Locations for PLCE1-AS2 Gene
chr10:94,081,950-94,108,814
(GRCh38/hg38)
Size:
26,865 bases
Orientation:
Minus strand
chr10:95,841,707-95,868,571
(GRCh37/hg19)
Size:
26,865 bases
Orientation:
Minus strand

Genomic View for PLCE1-AS2 Gene

Genes around PLCE1-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PLCE1-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PLCE1-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PLCE1-AS2 Gene

Proteins for PLCE1-AS2 Gene

Post-translational modifications for PLCE1-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PLCE1-AS2 Gene

Domains & Families for PLCE1-AS2 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PLCE1-AS2 Gene

Function for PLCE1-AS2 Gene

Phenotypes From GWAS Catalog for PLCE1-AS2 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PLCE1-AS2 Gene

Localization for PLCE1-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PLCE1-AS2 Gene

Pathways & Interactions for PLCE1-AS2 Gene

PathCards logo

SuperPathways for PLCE1-AS2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for PLCE1-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PLCE1-AS2 Gene

Drugs & Compounds for PLCE1-AS2 Gene

No Compound Related Data Available

Transcripts for PLCE1-AS2 Gene

mRNA/cDNA for PLCE1-AS2 Gene

(2) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(14) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(15) NONCODE transcripts :
(21) RNACentral transcripts :
(15) LncBook transcripts :
(19) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for PLCE1-AS2 Gene

No ASD Table

Relevant External Links for PLCE1-AS2 Gene

GeneLoc Exon Structure for
PLCE1-AS2
ECgene alternative splicing isoforms for
PLCE1-AS2

Expression for PLCE1-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for PLCE1-AS2 Gene

genes like me logo Genes that share expression patterns with PLCE1-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PLCE1-AS2 Gene

Orthologs for PLCE1-AS2 Gene

Evolution for PLCE1-AS2 Gene

ENSEMBL:
Gene Tree for PLCE1-AS2 (if available)
TreeFam:
Gene Tree for PLCE1-AS2 (if available)

No data available for Orthologs for PLCE1-AS2 Gene

Paralogs for PLCE1-AS2 Gene

No data available for Paralogs for PLCE1-AS2 Gene

Variants for PLCE1-AS2 Gene

Sequence variations from dbSNP and Humsavar for PLCE1-AS2 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000002164 -- 94,106,063(-) C/T intron_variant
rs1000034751 -- 94,106,406(-) G/T intron_variant
rs1000180639 -- 94,104,341(-) C/G/T non_coding_transcript_variant
rs1000231583 -- 94,100,457(-) G/A intron_variant, non_coding_transcript_variant
rs1000232845 -- 94,104,659(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for PLCE1-AS2 Gene

Variant ID Type Subtype PubMed ID
esv1967938 CNV deletion 18987734

Additional Variant Information for PLCE1-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PLCE1-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for PLCE1-AS2 Gene

Disorders for PLCE1-AS2 Gene

Additional Disease Information for PLCE1-AS2

No disorders were found for PLCE1-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PLCE1-AS2 Gene

Publications for PLCE1-AS2 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

No data available for External Links for PLCE1-AS2 Gene

Products for PLCE1-AS2 Gene

Sources for PLCE1-AS2 Gene