Aliases for PLCE1-AS1 Gene

Subcategory (RNA class) for PLCE1-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for PLCE1-AS1 Gene

  • PLCE1 Antisense RNA 1 2 3 5
  • PLCE1-AS1 2 168
  • HSALNG0079793 167
  • NONHSAG006560 92

External Ids for PLCE1-AS1 Gene

Previous GeneCards Identifiers for PLCE1-AS1 Gene

  • GC10M096040

Summaries for PLCE1-AS1 Gene

GeneCards Summary for PLCE1-AS1 Gene

PLCE1-AS1 (PLCE1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with PLCE1-AS1 include Nephrotic Syndrome, Type 3.

Additional gene information for PLCE1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PLCE1-AS1 Gene

Genomics for PLCE1-AS1 Gene

GeneHancer (GH) Regulatory Elements for PLCE1-AS1 Gene

Promoters and enhancers for PLCE1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J094287 Enhancer 0.3 Ensembl 500.7 -1.0 -1023 2.2 SCRT2 PLCE1-AS1 NOC3L RF00994-147 PLCE1
GH10J094360 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 9.9 -74.9 -74923 3.2 ZBTB40 ZNF217 EP300 CTCF MYC TCF12 POLR2G USF1 PHF8 ZFX NOC3L lnc-NOC3L-4 lnc-PLCE1-4 piR-60865 ENSG00000273450 FRA10AC1 PLCE1-AS1 PLCE1 NONHSAG006562.2
GH10J094314 Enhancer 0.8 Ensembl ENCODE 14.5 -28.5 -28471 2.2 NCOR1 FOXA2 NR2F2 ZBTB33 JUND CTCF RAD21 RXRA ZKSCAN1 HNF4A ENSG00000273450 PLCE1-AS1 CYP2C8 NONHSAG006562.2 NOC3L PLCE1
GH10J094291 Enhancer 0.6 Ensembl ENCODE 7.4 -5.6 -5616 2.6 SRF SPI1 GATA3 KDM1A FOXA1 NOC3L PLCE1-AS1 SLC35G1 RF00994-147 PLCE1
GH10J094310 Enhancer 0.7 ENCODE 6.1 -23.2 -23178 1.1 NCOR1 KDM6A ZBTB25 CEBPB USF1 TFDP1 SAP130 MXD4 ZGPAT MAX NOC3L PLCE1-AS1 ENSG00000273450 piR-38351-055 PLCE1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PLCE1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PLCE1-AS1 Gene

Genomic Locations for PLCE1-AS1 Gene
chr10:94,269,280-94,287,478
(GRCh38/hg38)
Size:
18,199 bases
Orientation:
Minus strand
chr10:96,039,034-96,046,828
(GRCh37/hg19)
Size:
7,795 bases
Orientation:
Minus strand

Genomic View for PLCE1-AS1 Gene

Genes around PLCE1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PLCE1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PLCE1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PLCE1-AS1 Gene

Proteins for PLCE1-AS1 Gene

Post-translational modifications for PLCE1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PLCE1-AS1 Gene

Domains & Families for PLCE1-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PLCE1-AS1 Gene

Function for PLCE1-AS1 Gene

Phenotypes From GWAS Catalog for PLCE1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PLCE1-AS1 Gene

Localization for PLCE1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PLCE1-AS1 Gene

Pathways & Interactions for PLCE1-AS1 Gene

PathCards logo

SuperPathways for PLCE1-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for PLCE1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PLCE1-AS1 Gene

Drugs & Compounds for PLCE1-AS1 Gene

No Compound Related Data Available

Transcripts for PLCE1-AS1 Gene

mRNA/cDNA for PLCE1-AS1 Gene

15 RNACentral transcripts :
1 REFSEQ mRNAs :
4 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
6 NONCODE transcripts :
12 LncBook transcripts :
13 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for PLCE1-AS1 Gene

No ASD Table

Relevant External Links for PLCE1-AS1 Gene

GeneLoc Exon Structure for
PLCE1-AS1

Expression for PLCE1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for PLCE1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for PLCE1-AS1 Gene

This gene is overexpressed in Artery - Tibial (x4.8).

SOURCE GeneReport for Unigene cluster for PLCE1-AS1 Gene:

Hs.677562
genes like me logo Genes that share expression patterns with PLCE1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PLCE1-AS1 Gene

Orthologs for PLCE1-AS1 Gene

Evolution for PLCE1-AS1 Gene

ENSEMBL:
Gene Tree for PLCE1-AS1 (if available)
TreeFam:
Gene Tree for PLCE1-AS1 (if available)

No data available for Orthologs for PLCE1-AS1 Gene

Paralogs for PLCE1-AS1 Gene

No data available for Paralogs for PLCE1-AS1 Gene

Variants for PLCE1-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for PLCE1-AS1 Gene

SNP ID Clinical significance and condition Chr 10 pos Variation AA Info Type
635085 Likely Pathogenic: Nephrotic syndrome, type 3 94,284,903(-) GCAGA/G FRAMESHIFT_VARIANT
768379 Benign: not provided 94,279,849(-) A/G MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT
796880 Benign: not provided 94,283,882(-) G/A MISSENSE_VARIANT
rs121912603 Pathogenic: Nephrotic syndrome, type 3 94,283,840(-) C/T NONSENSE
rs2274224 Uncertain Significance: not provided. Benign: Nephrotic syndrome; Nephrotic syndrome, type 3; not specified 94,279,840(-) G/AG/C MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT

Additional dbSNP identifiers (rs#s) for PLCE1-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for PLCE1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2761616 CNV gain 21179565

Additional Variant Information for PLCE1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PLCE1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for PLCE1-AS1 Gene

Disorders for PLCE1-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for PLCE1-AS1 Gene - From: GeneCards

Disorder Aliases PubMed IDs
nephrotic syndrome, type 3
  • nphs3
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for PLCE1-AS1

genes like me logo Genes that share disorders with PLCE1-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for PLCE1-AS1 Gene

Publications for PLCE1-AS1 Gene

No publications were found for PLCE1-AS1 Gene.

Products for PLCE1-AS1 Gene

Sources for PLCE1-AS1 Gene