Aliases for PLCB2-AS1 Gene

Data sources for PLCB2-AS1 Gene:

RNA type for PLCB2-AS1 Gene

lncRNA

Aliases for PLCB2-AS1 Gene

External Ids for PLCB2-AS1 Gene

Previous GeneCards Identifiers for PLCB2-AS1 Gene

  • GC15P040592

Summaries for PLCB2-AS1 Gene

GeneCards Summary for PLCB2-AS1 Gene

PLCB2-AS1 (PLCB2 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for PLCB2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PLCB2-AS1 Gene

Genomics for PLCB2-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for PLCB2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J040301 Enhancer 1 Ensembl ENCODE CraniofacialAtlas 250.7 +1.4 1431 2.2 IKZF1 NFIC BHLHE40 TAL1 SPI1 TCF12 MTA2 L3MBTL2 GATA2 HDAC1 PLCB2-AS1 HSALNG0105217 PLCB2 ANKRD63 ENSG00000259198
GH15J040291 Promoter/Enhancer 1.1 Ensembl ENCODE 0.4 -9.3 -9285 1.2 MYC ZNF592 BHLHE40 MAX KLF9 ZNF610 GABPB1 TAF1 NRF1 HNRNPL lnc-PLCB2-1-001 KNSTRN RPLP0P10 RAD51-AS1 RNA5SP392 CCDC9B PHGR1 INO80 PAK6-AS1 PAK6
GH15J040295 Enhancer 0.5 Ensembl 0.7 -4.4 -4370 1.8 ZIC2 ZBTB7B CTBP1 SMARCE1 DPF2 ZFHX2 GATAD2B PLCB2 RNA5SP392 CCDC9B PHGR1 DISP2 PAK6-AS1 PAK6 KNSTRN PLCB2-AS1 lnc-PLCB2-1-001
GH15J040292 Enhancer 0.4 Ensembl 0.4 -6.7 -6669 1.6 RFX1 EGR2 POLR2A ZFHX2 RNA5SP392 CCDC9B PHGR1 DISP2 PAK6-AS1 PAK6 lnc-PLCB2-1-001 ENSG00000259198 PLCB2-AS1 ANKRD63
GH15J040293 Enhancer 0.2 Ensembl 0.4 -8.2 -8169 0.2 lnc-PLCB2-1-001 RNA5SP392 CCDC9B PHGR1 DISP2 PAK6-AS1 PAK6 ANKRD63 ENSG00000259198 PLCB2-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PLCB2-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for PLCB2-AS1 Gene

Latest Assembly
chr15:40,300,670-40,301,820
(GRCh38/hg38)
Size:
1,151 bases
Orientation:
Plus strand

Previous Assembly
chr15:40,592,871-40,594,021
(GRCh37/hg19 by Ensembl)
Size:
1,151 bases
Orientation:
Plus strand

Genomic View for PLCB2-AS1 Gene

Genes around PLCB2-AS1 on UCSC Golden Path with GeneCards custom track
PLCB2-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
PLCB2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PLCB2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for PLCB2-AS1 Gene

Proteins for PLCB2-AS1 Gene

Post-translational modifications for PLCB2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PLCB2-AS1 Gene

Domains & Families for PLCB2-AS1 Gene

Gene Families for PLCB2-AS1 Gene

genes like me logo Genes that share domains with PLCB2-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PLCB2-AS1 Gene

Function for PLCB2-AS1 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PLCB2-AS1 Gene

Localization for PLCB2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PLCB2-AS1 Gene

Pathways & Interactions for PLCB2-AS1 Gene

PathCards logo

SuperPathways for PLCB2-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for PLCB2-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PLCB2-AS1 Gene

Drugs & Compounds for PLCB2-AS1 Gene

No Compound Related Data Available

Transcripts for PLCB2-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for PLCB2-AS1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00000FFA89_9606 lncRNA 568 3

Ensembl: ENST00000559520 (view in UCSC) ,

LncBook: HSALNT0218982,

NONCODE: NONHSAT041822.2,

URS0001BDFA95_9606 lncRNA 568 1

LncBook: HSALNT0218982,

PLCB2-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for PLCB2-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for PLCB2-AS1 Gene

No ASD Table

Relevant External Links for PLCB2-AS1 Gene

GeneLoc Exon Structure for
PLCB2-AS1

Expression for PLCB2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for PLCB2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for PLCB2-AS1 Gene

This gene is overexpressed in Whole Blood (x11.2) and Spleen (x6.0).
genes like me logo Genes that share expression patterns with PLCB2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PLCB2-AS1 Gene

Orthologs for PLCB2-AS1 Gene

Evolution for PLCB2-AS1 Gene

ENSEMBL:
Gene Tree for PLCB2-AS1 (if available)
TreeFam:
Gene Tree for PLCB2-AS1 (if available)
Alliance of Genome Resources:
Additional Orthologs for PLCB2-AS1

No data available for Orthologs for PLCB2-AS1 Gene

Paralogs for PLCB2-AS1 Gene

No data available for Paralogs for PLCB2-AS1 Gene

Variants for PLCB2-AS1 Gene

Additional Variant Information for PLCB2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PLCB2-AS1
Leiden Open Variation Database (LOVD)
PLCB2-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for PLCB2-AS1 Gene

Disorders for PLCB2-AS1 Gene

No disorders were found for PLCB2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PLCB2-AS1 Gene

Publications for PLCB2-AS1 Gene

No publications were found for PLCB2-AS1 Gene.

Products for PLCB2-AS1 Gene

Sources for PLCB2-AS1 Gene