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Aliases for PLAT Gene

Aliases for PLAT Gene

  • Plasminogen Activator, Tissue Type 2 3 5
  • T-Plasminogen Activator 3 4
  • Alteplase 3 4
  • Reteplase 3 4
  • T-PA 3 4
  • TPA 3 4
  • Tissue-Type Plasminogen Activator 3
  • Plasminogen/Activator Kringle 3
  • Plasminogen Activator, Tissue 2
  • EC 4

External Ids for PLAT Gene

Previous GeneCards Identifiers for PLAT Gene

  • GC08M041417
  • GC08M042061
  • GC08M041773
  • GC08M042050
  • GC08M042151
  • GC08M040559
  • GC08M042032

Summaries for PLAT Gene

Entrez Gene Summary for PLAT Gene

  • This gene encodes tissue-type plasminogen activator, a secreted serine protease that converts the proenzyme plasminogen to plasmin, a fibrinolytic enzyme. The encoded preproprotein is proteolytically processed by plasmin or trypsin to generate heavy and light chains. These chains associate via disulfide linkages to form the heterodimeric enzyme. This enzyme plays a role in cell migration and tissue remodeling. Increased enzymatic activity causes hyperfibrinolysis, which manifests as excessive bleeding, while decreased activity leads to hypofibrinolysis, which can result in thrombosis or embolism. Alternative splicing of this gene results in multiple transcript variants, at least one of which encodes an isoform that is proteolytically processed. [provided by RefSeq, Jan 2016]

GeneCards Summary for PLAT Gene

PLAT (Plasminogen Activator, Tissue Type) is a Protein Coding gene. Diseases associated with PLAT include Lethal Hydranencephaly-Diaphragmatic Hernia Syndrome and Thrombophilia, Familial, Due To Decreased Release Of Tissue Plasminogen Activator. Among its related pathways are Cell adhesion_ECM remodeling and Apelin signaling pathway. Gene Ontology (GO) annotations related to this gene include serine-type endopeptidase activity. An important paralog of this gene is HGFAC.

UniProtKB/Swiss-Prot for PLAT Gene

  • Converts the abundant, but inactive, zymogen plasminogen to plasmin by hydrolyzing a single Arg-Val bond in plasminogen. By controlling plasmin-mediated proteolysis, it plays an important role in tissue remodeling and degradation, in cell migration and many other physiopathological events. Plays a direct role in facilitating neuronal migration.

Gene Wiki entry for PLAT Gene

Additional gene information for PLAT Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PLAT Gene

Genomics for PLAT Gene

GeneHancer (GH) Regulatory Elements for PLAT Gene

Promoters and enhancers for PLAT Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J042205 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 655.7 -0.2 -241 4.9 PKNOX1 ZNF133 FEZF1 YY1 TCF12 ZNF213 FOS ATF7 KLF13 SP3 PLAT KAT6A POLB HGSNAT LOC101929897
GH08J042245 Enhancer 0.8 Ensembl ENCODE 26.1 -38.8 -38766 2.5 MEIS2 PKNOX1 EBF1 ZNF121 OSR2 PRDM6 NFIC POLR2A PBX2 TCF7L2 PLAT POLB LOC101929897 IKBKB AP3M2
GH08J042171 Enhancer 1.2 Ensembl ENCODE dbSUPER 13.1 +35.9 35882 1.1 ATF1 FOXA2 ARID4B SIN3A NFXL1 ZNF2 RAD21 YY1 ZNF335 ZNF121 PIR61234 IKBKB POLB PLAT HGSNAT LOC101929897 VDAC3 KAT6A DKK4 AP3M2
GH08J042251 Enhancer 0.6 ENCODE 25.5 -45.0 -44996 1.6 JUN TAL1 CEBPB CBFA2T3 ZEB2 DPF2 TCF12 JUND CBFA2T2 TRIM24 PLAT POLB LOC101929897
GH08J042049 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 5.2 +156.3 156257 3.4 FEZF1 DMAP1 IRF4 YY1 SLC30A9 E2F8 ZNF143 ZNF263 SP3 NFYC KAT6A LOC105379393 IKBKB ENSG00000254165 AP3M2 PLAT GPAT4 POLB GC08M041977
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PLAT on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the PLAT gene promoter:
  • CREB
  • deltaCREB

Genomic Locations for PLAT Gene

Genomic Locations for PLAT Gene
33,007 bases
Minus strand
33,007 bases
Minus strand

Genomic View for PLAT Gene

Genes around PLAT on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PLAT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PLAT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PLAT Gene

Proteins for PLAT Gene

  • Protein details for PLAT Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Tissue-type plasminogen activator
    Protein Accession:
    Secondary Accessions:
    • A8K022
    • B2R8E8
    • Q15103
    • Q503B0
    • Q6PJA5
    • Q7Z7N2
    • Q86YK8
    • Q9BU99
    • Q9BZW1

    Protein attributes for PLAT Gene

    562 amino acids
    Molecular mass:
    62917 Da
    Quaternary structure:
    • Heterodimer of chain A and chain B held by a disulfide bond. Forms a heterodimer with SERPINA5. Binds to fibrin with high affinity. This interaction leads to an increase in the catalytic efficiency of the enzyme between 100-fold and 1000-fold, due to an increase in affinity for plasminogen. Similarly, binding to heparin increases the activation of plasminogen. Binds to annexin A2, cytokeratin-8, fibronectin and laminin. Binds to mannose receptor and the low-density lipoprotein receptor-related protein (LRP1); these proteins are involved in TPA clearance. Yet unidentified interactions on endothelial cells and vascular smooth muscle cells (VSMC) lead to a 100-fold stimulation of plasminogen activation. In addition, binding to VSMC reduces TPA inhibition by PAI-1 by 30-fold. Binds LRP1B; binding is followed by internalization and degradation.

    Three dimensional structures from OCA and Proteopedia for PLAT Gene

    Alternative splice isoforms for PLAT Gene


neXtProt entry for PLAT Gene

Post-translational modifications for PLAT Gene

  • The single chain, almost fully active enzyme, can be further processed into a two-chain fully active form by a cleavage after Arg-310 catalyzed by plasmin, tissue kallikrein or factor Xa.
  • Differential cell-specific N-linked glycosylation gives rise to two glycoforms, type I (glycosylated at Asn-219) and type II (not glycosylated at Asn-219). The single chain type I glycoform is less readily converted into the two-chain form by plasmin, and the two-chain type I glycoform has a lower activity than the two-chain type II glycoform in the presence of fibrin.
  • N-glycosylation of Asn-152; the bound oligomannosidic glycan is involved in the interaction with the mannose receptor.
  • Characterization of O-linked glycan was studied in Bowes melanoma cell line.
  • Glycosylation at isoforms=3, 4487, isoforms=3, 4483, Asn219, Asn152, and isoforms=2, 396
  • Modification sites at PhosphoSitePlus
  • Glycosylation from GlyConnect

No data available for DME Specific Peptides for PLAT Gene

Domains & Families for PLAT Gene

Gene Families for PLAT Gene

Human Protein Atlas (HPA):
  • Cancer-related genes
  • Candidate cardiovascular disease genes
  • Disease related genes
  • Enzymes
  • FDA approved drug targets
  • Plasma proteins
  • Predicted secreted proteins

Graphical View of Domain Structure for InterPro Entry



  • Both FN1 and one of the kringle domains are required for binding to fibrin.
  • Belongs to the peptidase S1 family.
  • Both FN1 and one of the kringle domains are required for binding to fibrin.
  • Both FN1 and EGF-like domains are important for binding to LRP1.
  • The FN1 domain mediates binding to annexin A2.
  • The second kringle domain is implicated in binding to cytokeratin-8 and to the endothelial cell surface binding site.
  • Belongs to the peptidase S1 family.
genes like me logo Genes that share domains with PLAT: view

Function for PLAT Gene

Molecular function for PLAT Gene

UniProtKB/Swiss-Prot Function:
Converts the abundant, but inactive, zymogen plasminogen to plasmin by hydrolyzing a single Arg-Val bond in plasminogen. By controlling plasmin-mediated proteolysis, it plays an important role in tissue remodeling and degradation, in cell migration and many other physiopathological events. Plays a direct role in facilitating neuronal migration.
UniProtKB/Swiss-Prot CatalyticActivity:
Specific cleavage of Arg- -Val bond in plasminogen to form plasmin.
UniProtKB/Swiss-Prot EnzymeRegulation:
Inhibited by SERPINA5.
GENATLAS Biochemistry:
plasminogen activator,tissue-type

Enzyme Numbers (IUBMB) for PLAT Gene

Phenotypes From GWAS Catalog for PLAT Gene

Gene Ontology (GO) - Molecular Function for PLAT Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004252 serine-type endopeptidase activity IEA,TAS --
GO:0005102 signaling receptor binding IPI 8186264
GO:0005515 protein binding TAS 8186264
GO:0008233 peptidase activity IEA --
GO:0008236 serine-type peptidase activity IEA --
genes like me logo Genes that share ontologies with PLAT: view
genes like me logo Genes that share phenotypes with PLAT: view

Human Phenotype Ontology for PLAT Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Models for PLAT Gene

MGI Knock Outs for PLAT:
  • Plat Plat<tm1.1(KOMP)Vlcg>
  • Plat Plat<tm1Mlg>

Animal Model Products

miRNA for PLAT Gene

miRTarBase miRNAs that target PLAT

Clone Products

No data available for Transcription Factor Targets and HOMER Transcription for PLAT Gene

Localization for PLAT Gene

Subcellular locations from UniProtKB/Swiss-Prot for PLAT Gene

Secreted, extracellular space.

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for PLAT gene
Compartment Confidence
extracellular 5
plasma membrane 3
cytoskeleton 3
nucleus 2
cytosol 2
lysosome 2
endoplasmic reticulum 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Actin filaments (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for PLAT Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA,TAS --
GO:0005615 extracellular space IEA --
GO:0005737 cytoplasm IDA 1632457
GO:0009986 cell surface IDA 1632457
GO:0030141 secretory granule IEA --
genes like me logo Genes that share ontologies with PLAT: view

Pathways & Interactions for PLAT Gene

genes like me logo Genes that share pathways with PLAT: view

Gene Ontology (GO) - Biological Process for PLAT Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001666 response to hypoxia IEA --
GO:0006464 cellular protein modification process TAS 3087818
GO:0006508 proteolysis TAS,IEA 3087818
GO:0007596 blood coagulation TAS 3839198
GO:0014909 smooth muscle cell migration IEA --
genes like me logo Genes that share ontologies with PLAT: view

No data available for SIGNOR curated interactions for PLAT Gene

Drugs & Compounds for PLAT Gene

(84) Drugs for PLAT Gene - From: DrugBank, DGIdb, HMDB, and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Iloprost Approved, Investigational Pharma Full agonist, Agonist, Target, other/unknown Others, Prostacyclin (PGI2) analog 83
Urokinase Approved, Investigational, Withdrawn Pharma activator, Target 0
Tranexamic Acid Approved Pharma inhibitor 302
Aminocaproic Acid Approved, Investigational Pharma Target, antagonist 28
Conestat alfa Approved, Investigational Pharma Target, inhibitor 0

(63) Additional Compounds for PLAT Gene - From: Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
genes like me logo Genes that share compounds with PLAT: view

Transcripts for PLAT Gene

mRNA/cDNA for PLAT Gene

Unigene Clusters for PLAT Gene

Plasminogen activator, tissue:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for PLAT Gene

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3 ^ 4a · 4b ^ 5a · 5b · 5c · 5d ^ 6 ^ 7a · 7b ^ 8a · 8b ^ 9a · 9b ^ 10a · 10b ^ 11a · 11b · 11c ^ 12a · 12b ^
SP1: - -
SP2: - - - -
SP3: - - - - - - - -
SP4: - - - - - - - -
SP5: - - - - - - - - -
SP6: - -
SP7: - - - -

ExUns: 13 ^ 14

Relevant External Links for PLAT Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for PLAT Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for PLAT Gene

Protein differential expression in normal tissues from HIPED for PLAT Gene

This gene is overexpressed in Amniocyte (33.3) and Breast (23.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for PLAT Gene

Protein tissue co-expression partners for PLAT Gene

NURSA nuclear receptor signaling pathways regulating expression of PLAT Gene:


SOURCE GeneReport for Unigene cluster for PLAT Gene:


mRNA Expression by UniProt/SwissProt for PLAT Gene:

Tissue specificity: Synthesized in numerous tissues (including tumors) and secreted into most extracellular body fluids, such as plasma, uterine fluid, saliva, gingival crevicular fluid, tears, seminal fluid, and milk.

Evidence on tissue expression from TISSUES for PLAT Gene

  • Skin(4.9)
  • Nervous system(4.9)
  • Lung(4.8)
  • Kidney(4)
  • Intestine(3.5)
  • Heart(3.3)
  • Blood(3.2)
  • Pancreas(3.2)
  • Liver(3)
  • Muscle(2.7)
  • Eye(2.1)

Phenotype-based relationships between genes and organs from Gene ORGANizer for PLAT Gene

Germ Layers:
  • mesoderm
  • cardiovascular
  • blood
  • blood vessel
  • coagulation system
genes like me logo Genes that share expression patterns with PLAT: view

No data available for mRNA differential expression in normal tissues for PLAT Gene

Orthologs for PLAT Gene

This gene was present in the common ancestor of chordates.

Orthologs for PLAT Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia PLAT 34 33
  • 99.47 (n)
(Canis familiaris)
Mammalia PLAT 33
  • 81.94 (n)
-- 34
  • 80 (a)
-- 34
  • 70 (a)
(Bos Taurus)
Mammalia PLAT 34 33
  • 81.55 (n)
(Rattus norvegicus)
Mammalia Plat 33
  • 79.77 (n)
(Mus musculus)
Mammalia Plat 16 34 33
  • 79.71 (n)
(Monodelphis domestica)
Mammalia PLAT 34
  • 70 (a)
(Ornithorhynchus anatinus)
Mammalia PLAT 34
  • 62 (a)
(Gallus gallus)
Aves PLAT 34 33
  • 64.61 (n)
(Anolis carolinensis)
Reptilia PLAT 34
  • 61 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia plat 33
  • 60.12 (n)
African clawed frog
(Xenopus laevis)
Amphibia Xl.9397 33
(Danio rerio)
Actinopterygii plat 34 33
  • 56.71 (n)
Species where no ortholog for PLAT was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for PLAT Gene

Gene Tree for PLAT (if available)
Gene Tree for PLAT (if available)
Evolutionary constrained regions (ECRs) for PLAT: view image

Paralogs for PLAT Gene

Paralogs for PLAT Gene

(45) SIMAP similar genes for PLAT Gene using alignment to 9 proteins:

  • B4DN26_HUMAN
  • B8ZX62_HUMAN
  • K4DI88_HUMAN
genes like me logo Genes that share paralogs with PLAT: view

Variants for PLAT Gene

Sequence variations from dbSNP and Humsavar for PLAT Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs886041071 uncertain-significance, not provided 42,191,384(-) TG/ coding_sequence_variant, frameshift
rs1000012336 -- 42,192,610(-) T/C intron_variant
rs1000068928 -- 42,199,378(-) A/G intron_variant
rs1000089465 -- 42,197,218(-) A/G intron_variant
rs1000167980 -- 42,208,710(-) C/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for PLAT Gene

Variant ID Type Subtype PubMed ID
nsv1132143 CNV deletion 24896259
nsv398046 CNV deletion 16902084
nsv824616 CNV loss 20364138

Variation tolerance for PLAT Gene

Residual Variation Intolerance Score: 45.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.72; 46.57% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for PLAT Gene

Human Gene Mutation Database (HGMD)
SNPedia medical, phenotypic, and genealogical associations of SNPs for

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for PLAT Gene

Disorders for PLAT Gene

MalaCards: The human disease database

(77) MalaCards diseases for PLAT Gene - From: HGMD, GTR, Orphanet, DISEASES, Novoseek, and GeneCards

- elite association - COSMIC cancer census association via MalaCards
Search PLAT in MalaCards View complete list of genes associated with diseases


  • Note=Increased activity of TPA results in increased fibrinolysis of fibrin blood clots that is associated with excessive bleeding. Defective release of TPA results in hypofibrinolysis that can lead to thrombosis or embolism. {ECO:0000269 PubMed:1762144}.

Genatlas disease for PLAT Gene


Additional Disease Information for PLAT

Genetic Association Database
Human Genome Epidemiology Navigator
Tumor Gene Database
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
genes like me logo Genes that share disorders with PLAT: view

Publications for PLAT Gene

  1. Male-female differences in the genetic regulation of t-PA and PAI-1 levels in a Ghanaian population. (PMID: 18953568) Schoenhard JA … Williams SM (Human genetics 2008) 3 22 44 58
  2. Tissue plasminogen activator genetic polymorphisms do not influence tissue plasminogen activator release in patients with coronary heart disease. (PMID: 16836660) Robinson SD … Newby DE (Journal of thrombosis and haemostasis : JTH 2006) 3 22 44 58
  3. Common genetic variation in five thrombosis genes and relations to plasma hemostatic protein level and cardiovascular disease risk. (PMID: 16614319) Kathiresan S … O'Donnell CJ (Arteriosclerosis, thrombosis, and vascular biology 2006) 3 22 44 58
  4. Is tissue-plasminogen activator gene polymorphism a risk factor for venous thromboembolism in every population? (PMID: 15976969) Oguzulgen IK … Akar N (Journal of thrombosis and thrombolysis 2005) 3 22 44 58
  5. Genetic variation at the human tissue-type plasminogen activator (tPA) locus: haplotypes and analysis of association to plasma levels of tPA. (PMID: 12891381) Ladenvall P … Jern C (European journal of human genetics : EJHG 2003) 3 22 44 58

Products for PLAT Gene

Sources for PLAT Gene

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