Aliases for PLAC9P1 Gene

Aliases for PLAC9P1 Gene

  • Placenta Associated 9 Pseudogene 1 2 3 5
  • Placenta Specific 9 Pseudogene 1 2 3
  • PLAC9P1 5

External Ids for PLAC9P1 Gene

Summaries for PLAC9P1 Gene

GeneCards Summary for PLAC9P1 Gene

PLAC9P1 (Placenta Associated 9 Pseudogene 1) is a Pseudogene. Diseases associated with PLAC9P1 include Lung Cancer Susceptibility 3.

Additional gene information for PLAC9P1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PLAC9P1 Gene

Genomics for PLAC9P1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for PLAC9P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J129933 Promoter/Enhancer 0.9 Ensembl ENCODE 250.7 -0.4 -387 2.4 ZNF366 KDM1A EZH2 PLAC9P1 lnc-POTEF-1 piR-61945-285 RAB6C-AS1 LINC01856 RAB6C
GH02J130194 Enhancer 0.5 dbSUPER 4.2 -260.8 -260761 0.4 NCOR1 MEIS2 NR2C1 KDM1A CBFA2T2 CBFA2T3 TUBA3E PLAC9P1 lnc-MZT2B-5 SMPD4
GH02J129929 Enhancer 0.8 Ensembl ENCODE CraniofacialAtlas 0.7 +4.4 4417 2.2 JUND CTCF ATF2 GLIS1 CREB1 CHD2 RAB6C-AS1 CCDC115 PTPN18 PLAC9P1 lnc-POTEF-1 LINC01856 RAB6C
GH02J129923 Promoter 0.7 Ensembl 0.4 +11.0 11016 0.6 ZEB1 CTCF SIN3A RAD21 ZNF687 ZNF143 EZH2 ZNF335 LINC01856 lnc-POTEF-1 PLAC9P1 RAB6C
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PLAC9P1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for PLAC9P1 Gene

Latest Assembly
chr2:129,922,862-129,934,317
(GRCh38/hg38)
Size:
11,456 bases
Orientation:
Minus strand

Previous Assembly
chr2:130,680,435-130,691,890
(GRCh37/hg19 by Entrez Gene)
Size:
11,456 bases
Orientation:
Minus strand

chr2:130,680,435-130,691,890
(GRCh37/hg19 by Ensembl)
Size:
11,456 bases
Orientation:
Minus strand

Genomic View for PLAC9P1 Gene

Genes around PLAC9P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PLAC9P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PLAC9P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PLAC9P1 Gene

Proteins for PLAC9P1 Gene

Post-translational modifications for PLAC9P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PLAC9P1 Gene

Domains & Families for PLAC9P1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PLAC9P1 Gene

Function for PLAC9P1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PLAC9P1 Gene

Localization for PLAC9P1 Gene

Gene Ontology (GO) - Cellular Components for PLAC9P1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA --
genes like me logo Genes that share ontologies with PLAC9P1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for PLAC9P1 Gene

Pathways & Interactions for PLAC9P1 Gene

PathCards logo

SuperPathways for PLAC9P1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for PLAC9P1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PLAC9P1 Gene

Drugs & Compounds for PLAC9P1 Gene

No Compound Related Data Available

Transcripts for PLAC9P1 Gene

mRNA/cDNA for PLAC9P1 Gene

2 NCBI additional mRNA sequence :
3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for PLAC9P1 Gene

No ASD Table

Relevant External Links for PLAC9P1 Gene

GeneLoc Exon Structure for
PLAC9P1

Expression for PLAC9P1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for PLAC9P1

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PLAC9P1 Gene

Orthologs for PLAC9P1 Gene

Evolution for PLAC9P1 Gene

ENSEMBL:
Gene Tree for PLAC9P1 (if available)
TreeFam:
Gene Tree for PLAC9P1 (if available)
Alliance of Genome Resources:
Additional Orthologs for PLAC9P1

No data available for Orthologs for PLAC9P1 Gene

Paralogs for PLAC9P1 Gene

No data available for Paralogs for PLAC9P1 Gene

Variants for PLAC9P1 Gene

Structural Variations from Database of Genomic Variants (DGV) for PLAC9P1 Gene

Variant ID Type Subtype PubMed ID
esv2751826 CNV gain 17911159
esv2759092 CNV gain+loss 17122850
nsv1002178 CNV gain 25217958
nsv1003941 CNV gain 25217958
nsv10157 CNV loss 18304495
nsv428403 CNV loss 18775914
nsv459274 CNV loss 19166990
nsv583046 CNV loss 21841781
nsv821629 CNV loss 15273396
nsv834374 CNV gain 17160897

Additional Variant Information for PLAC9P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PLAC9P1
Leiden Open Variation Database (LOVD)
PLAC9P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance and Variation tolerance for PLAC9P1 Gene

Disorders for PLAC9P1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for PLAC9P1 Gene - From: LNC

Disorder Aliases PubMed IDs
lung cancer susceptibility 3
  • lncr3
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for PLAC9P1

genes like me logo Genes that share disorders with PLAC9P1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for PLAC9P1 Gene

Publications for PLAC9P1 Gene

  1. Long noncoding RNA expression profiles of lung adenocarcinoma ascertained by microarray analysis. (PMID: 25089627) Xu G … Wang Y (PloS one 2014) 72
  2. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PMID: 15815621) Hillier LW … Wilson RK (Nature 2005) 3

No data available for Mastermind for PLAC9P1 Gene

Products for PLAC9P1 Gene

Sources for PLAC9P1 Gene