Aliases for PLA2G4C-AS1 Gene

Subcategory (RNA class) for PLA2G4C-AS1 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for PLA2G4C-AS1 Gene

  • PLA2G4C Antisense RNA 1 2 3 5
  • HSALNG0126825 169
  • NONHSAG026147 94
  • CTD-2265M8.2 3
  • PLA2G4C-AS1 2

External Ids for PLA2G4C-AS1 Gene

Previous GeneCards Identifiers for PLA2G4C-AS1 Gene

  • GC00U936383

Summaries for PLA2G4C-AS1 Gene

GeneCards Summary for PLA2G4C-AS1 Gene

PLA2G4C-AS1 (PLA2G4C Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for PLA2G4C-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PLA2G4C-AS1 Gene

Genomics for PLA2G4C-AS1 Gene

GeneHancer (GH) Regulatory Elements for PLA2G4C-AS1 Gene

Promoters and enhancers for PLA2G4C-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J048062 Promoter/Enhancer 0.7 Ensembl ENCODE 750.6 +0.8 767 1.2 CTCF SP1 FOXA1 PLA2G4C-AS1 SLC8A2 lnc-LIG1-3 PLA2G4C
GH19J048061 Enhancer 0.2 FANTOM5 750.6 -0.1 -142 0.4 PLA2G4C-AS1 CABP5 KCNJ14 CRX piR-61570-002 PLA2G4C
GH19J048064 Enhancer 0.4 Ensembl ENCODE 0.6 +3.5 3466 0.7 ZNF766 CABP5 PLA2G4C-AS1 lnc-LIG1-3 PLA2G4C
GH19J048057 Enhancer 0.3 Ensembl 0.6 -4.1 -4070 0.6 HLF PLA2G4C-AS1 piR-61570-002 PLA2G4C
GH19J048083 Enhancer 0.3 FANTOM5 0.3 +22.6 22557 0.1 ZSCAN4 PLA2G4C ELSPBP1 BSPH1 LMTK3 lnc-LIG1-3 PLA2G4C-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PLA2G4C-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PLA2G4C-AS1 Gene

Genomic Locations for PLA2G4C-AS1 Gene
chr19:48,061,371-48,064,945
(GRCh38/hg38)
Size:
3,575 bases
Orientation:
Plus strand
chr19:48,564,628-48,568,202
(GRCh37/hg19)
Size:
3,575 bases
Orientation:
Plus strand

Genomic View for PLA2G4C-AS1 Gene

Genes around PLA2G4C-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PLA2G4C-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PLA2G4C-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PLA2G4C-AS1 Gene

Proteins for PLA2G4C-AS1 Gene

Post-translational modifications for PLA2G4C-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PLA2G4C-AS1 Gene

Domains & Families for PLA2G4C-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PLA2G4C-AS1 Gene

Function for PLA2G4C-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PLA2G4C-AS1 Gene

Localization for PLA2G4C-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PLA2G4C-AS1 Gene

Pathways & Interactions for PLA2G4C-AS1 Gene

PathCards logo

SuperPathways for PLA2G4C-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for PLA2G4C-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PLA2G4C-AS1 Gene

Drugs & Compounds for PLA2G4C-AS1 Gene

No Compound Related Data Available

Transcripts for PLA2G4C-AS1 Gene

mRNA/cDNA for PLA2G4C-AS1 Gene

(3) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) NONCODE transcripts :
(5) RNACentral transcripts :
(1) LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for PLA2G4C-AS1 Gene

No ASD Table

Relevant External Links for PLA2G4C-AS1 Gene

GeneLoc Exon Structure for
PLA2G4C-AS1
ECgene alternative splicing isoforms for
PLA2G4C-AS1

Expression for PLA2G4C-AS1 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PLA2G4C-AS1 Gene

Orthologs for PLA2G4C-AS1 Gene

Evolution for PLA2G4C-AS1 Gene

ENSEMBL:
Gene Tree for PLA2G4C-AS1 (if available)
TreeFam:
Gene Tree for PLA2G4C-AS1 (if available)

No data available for Orthologs for PLA2G4C-AS1 Gene

Paralogs for PLA2G4C-AS1 Gene

No data available for Paralogs for PLA2G4C-AS1 Gene

Variants for PLA2G4C-AS1 Gene

Sequence variations from dbSNP and Humsavar for PLA2G4C-AS1 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000556160 -- 48,063,694(+) G/A/C genic_downstream_transcript_variant, intron_variant
rs1002026223 -- 48,062,525(+) A/T downstream_transcript_variant, genic_downstream_transcript_variant, intron_variant
rs1002122952 -- 48,062,335(+) G/A downstream_transcript_variant, genic_downstream_transcript_variant, intron_variant
rs1003131301 -- 48,060,629(+) G/A upstream_transcript_variant
rs1003639986 -- 48,060,264(+) G/T upstream_transcript_variant

Additional Variant Information for PLA2G4C-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PLA2G4C-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for PLA2G4C-AS1 Gene

Disorders for PLA2G4C-AS1 Gene

Additional Disease Information for PLA2G4C-AS1

No disorders were found for PLA2G4C-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PLA2G4C-AS1 Gene

Publications for PLA2G4C-AS1 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 56
  2. Initial assessment of human gene diversity and expression patterns based upon 83 million nucleotides of cDNA sequence. (PMID: 7566098) Adams MD … White O (Nature 1995) 3 56

No data available for External Links for PLA2G4C-AS1 Gene

Products for PLA2G4C-AS1 Gene

Sources for PLA2G4C-AS1 Gene