PLA2G4B Gene (Protein Coding)

Phospholipase A2 Group IVB

GC15P041837
GIFtS:
39
This gene encodes a member of the cytosolic phospholipase A2 protein family. Phospholipase A2 enzymes hydrolyze the sn-2 bond of phospholipids, releasing lysophospholipids and fatty acids. This enzyme may be associated with mitochondria and early endosomes. Most tissues also express read-through transcripts from the upstream gene into this gene, some of which may encode fusion ... See more...

Aliases for PLA2G4B Gene

Aliases for PLA2G4B Gene

  • Phospholipase A2 Group IVB 2 3 4 5
  • Phospholipase A2, Group IVB (Cytosolic) 2 3
  • Cytosolic Phospholipase A2 Beta 3 4
  • CPLA2-Beta 3 4
  • EC 3.1.1.4 4 52
  • HsT16992 3

External Ids for PLA2G4B Gene

Previous GeneCards Identifiers for PLA2G4B Gene

  • GC15P037488
  • GC15P035016
  • GC15P039699
  • GC15P039836
  • GC15P039907
  • GC15P042120
  • GC15P042129
  • GC15P018979

Summaries for PLA2G4B Gene

Entrez Gene Summary for PLA2G4B Gene

  • This gene encodes a member of the cytosolic phospholipase A2 protein family. Phospholipase A2 enzymes hydrolyze the sn-2 bond of phospholipids, releasing lysophospholipids and fatty acids. This enzyme may be associated with mitochondria and early endosomes. Most tissues also express read-through transcripts from the upstream gene into this gene, some of which may encode fusion proteins combining the N-terminus of the upstream gene including its JmjC domain with the almost complete coding region of this gene, including the C2 and cytoplasmic phospholipase A2 domains. [provided by RefSeq, Jul 2008]

GeneCards Summary for PLA2G4B Gene

PLA2G4B (Phospholipase A2 Group IVB) is a Protein Coding gene. Diseases associated with PLA2G4B include Inflammatory Bowel Disease 9. Among its related pathways are Oxytocin signaling pathway and Immune response Fc epsilon RI pathway. Gene Ontology (GO) annotations related to this gene include calcium ion binding and phospholipase activity. An important paralog of this gene is JMJD7-PLA2G4B.

UniProtKB/Swiss-Prot Summary for PLA2G4B Gene

  • Calcium-dependent phospholipase A2 that selectively hydrolyzes glycerophospholipids in the sn-2 position with a preference for arachidonoyl phospholipids. Has a much weaker activity than PLA2G4A. Isoform 3 has calcium-dependent activity against palmitoyl-arachidonyl-phosphatidylethanolamine and low level lysophospholipase activity but no activity against phosphatidylcholine. Isoform 5 does have activity against phosphatidylcholine.

Tocris Summary for PLA2G4B Gene

  • Phospholipases are a group of enzymes that hydrolyze phospholipids into fatty acids and other lipophilic molecules. There are four major classes; phospholipase A, phospholipase B, phosphoinositide-specific phospholipase C and phospholipase D.

Additional gene information for PLA2G4B Gene

No data available for CIViC Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PLA2G4B Gene

Genomics for PLA2G4B Gene

GeneHancer (GH) Regulatory Elements for PLA2G4B Gene

Promoters and enhancers for PLA2G4B Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH15J041837 Enhancer 1 Ensembl ENCODE dbSUPER 513 +0.9 928 1.8 ZNF217 CTBP1 SIN3A MBD2 NR3C1 POLR2G CEBPB RCOR1 ELF1 ZFHX2 PLA2G4B JMJD7 JMJD7-PLA2G4B lnc-EHD4-1
GH15J041836 Enhancer 0.4 Ensembl dbSUPER 500.7 -1.6 -1574 0.4 ZNF341 PLA2G4B JMJD7 MAPKBP1 JMJD7-PLA2G4B
GH15J041838 Enhancer 0.3 Ensembl dbSUPER 500.7 -0.5 -474 0.2 PLA2G4B JMJD7 JMJD7-PLA2G4B
GH15J041659 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE CraniofacialAtlas 11.2 -176.6 -176553 4 HNRNPK ZBTB40 EP300 CTCF SIN3A NRF1 TCF12 POLR2G USF1 BCLAF1 JMJD7 PLA2G4B MAPKBP1 MGA EHD4 piR-50437-209 MIR626
GH15J041772 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 9.3 -61.8 -61777 6.4 RXRA EP300 ZBTB40 ZNF217 CTCF SIN3A NRF1 MYC POLR2G SP1 MAPKBP1 JMJD7 SPTBN5 VPS39 ENSG00000250379 JMJD7-PLA2G4B CDAN1 ENSG00000174171 MGA INO80
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PLA2G4B on UCSC Golden Path with GeneCards custom track

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for PLA2G4B

Top Transcription factor binding sites by QIAGEN in the PLA2G4B gene promoter:
  • AP-2gamma
  • HEN1
  • Msx-1
  • PPAR-gamma1
  • PPAR-gamma2
  • SEF-1 (1)
  • STAT5A
  • USF-1
  • USF1
  • YY1

Genomic Locations for PLA2G4B Gene

Genomic Locations for PLA2G4B Gene
chr15:41,837,775-41,848,148
(GRCh38/hg38)
Size:
10,374 bases
Orientation:
Plus strand
chr15:42,120,283-42,140,346
(GRCh37/hg19)
Size:
20,064 bases
Orientation:
Plus strand

Genomic View for PLA2G4B Gene

Genes around PLA2G4B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PLA2G4B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PLA2G4B Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for PLA2G4B Gene

Proteins for PLA2G4B Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for PLA2G4B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0C869-PA24B_HUMAN
    Recommended name:
    Cytosolic phospholipase A2 beta
    Protein Accession:
    P0C869
    Secondary Accessions:
    • B4DRT9
    • O95712
    • Q19KD5
    • Q19KD6
    • Q59GF9
    • Q8TB10
    • Q9UKV7

    Protein attributes for PLA2G4B Gene

    Size:
    781 amino acids
    Molecular mass:
    87978 Da
    Quaternary structure:
    No Data Available
    Miscellaneous:
    • [Isoform 2]: Based on a naturally occurring readthrough transcript which produces a JMJD7-PLA2G4B fusion protein.
    • [Isoform 3]: Based on a naturally occurring readthrough transcript which produces a JMJD7-PLA2G4B fusion protein.
    • [Isoform 5]: Based on a naturally occurring readthrough transcript which produces a JMJD7-PLA2G4B fusion protein.
    SequenceCaution:
    • Sequence=BAD92387.1; Type=Erroneous initiation; Note=Extended N-terminus.; Evidence={ECO:0000305};

    Alternative splice isoforms for PLA2G4B Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for PLA2G4B Gene

Protein Expression for PLA2G4B Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Selected DME Specific Peptides for PLA2G4B Gene

P0C869:
  • EFSPYEVG
  • RAMTSLYG

Post-translational modifications for PLA2G4B Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for PLA2G4B Gene

ENSEMBL proteins:
REFSEQ proteins:

Domains & Families for PLA2G4B Gene

Gene Families for PLA2G4B Gene

HGNC:
IUPHAR :
Human Protein Atlas (HPA):
  • Enzymes
  • Predicted intracellular proteins

Protein Domains for PLA2G4B Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for PLA2G4B Gene

GenScript: Design optimal peptide antigens:
  • Phospholipase A2 group IVB (PA24B_HUMAN)

Graphical View of Domain Structure for InterPro Entry

P0C869

UniProtKB/Swiss-Prot:

PA24B_HUMAN :
  • The N-terminal C2 domain associates with lipid membranes upon calcium binding. It modulates enzyme activity by presenting the active site to its substrate in response to elevations of cytosolic Ca(2+) (By similarity).
Domain:
  • The N-terminal C2 domain associates with lipid membranes upon calcium binding. It modulates enzyme activity by presenting the active site to its substrate in response to elevations of cytosolic Ca(2+) (By similarity).
genes like me logo Genes that share domains with PLA2G4B: view

Function for PLA2G4B Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Molecular function for PLA2G4B Gene

UniProtKB/Swiss-Prot Function:
Calcium-dependent phospholipase A2 that selectively hydrolyzes glycerophospholipids in the sn-2 position with a preference for arachidonoyl phospholipids. Has a much weaker activity than PLA2G4A. Isoform 3 has calcium-dependent activity against palmitoyl-arachidonyl-phosphatidylethanolamine and low level lysophospholipase activity but no activity against phosphatidylcholine. Isoform 5 does have activity against phosphatidylcholine.
UniProtKB/Swiss-Prot CatalyticActivity:
Reaction=a 1,2-diacyl-sn-glycero-3-phosphocholine + H2O = a 1-acyl-sn-glycero-3-phosphocholine + a fatty acid + H(+); Xref=Rhea:RHEA:15801, ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:28868, ChEBI:CHEBI:57643, ChEBI:CHEBI:58168; EC=3.1.1.4; Evidence={ECO:0000269 PubMed:10085124, ECO:0000269 PubMed:10358058, ECO:0000269 PubMed:16617059};.
UniProtKB/Swiss-Prot EnzymeRegulation:
Stimulated by cytosolic Ca(2+).
UniProtKB/Swiss-Prot BiophysicochemicalProperties:
Kinetic parameters: Vmax=7.9 pmol/min/mg enzyme (isoform 5) {ECO:0000269 PubMed:10085124}; Vmax=3.6 pmol/min/ug enzyme with cAMP as substrate (isoform 4) {ECO:0000269 PubMed:10085124}; Vmax=140 nmol/min/ug enzyme with 1-[14C]16:0-2-lyso-PC as substrate (isoform 5) {ECO:0000269 PubMed:10085124}; Vmax=1.6 nmol/min/ug enzyme with 1-[14C]16:0-2-lyso-PC as substrate (isoform 3) {ECO:0000269 PubMed:10085124}; Vmax=2.1 nmol/min/ug enzyme with 1-16:0-2-[14C]20:4-PC as substrate (isoform 5) {ECO:0000269 PubMed:10085124}; Vmax=0.6 nmol/min/ug enzyme with 1-16:0-2-[14C]20:4-PE as substrate (isoform 5) {ECO:0000269 PubMed:10085124}; Vmax=0.8 nmol/min/ug enzyme with 1-16:0-2-[14C]20:4-PE as substrate (isoform 3) {ECO:0000269 PubMed:10085124}; Vmax=0.3 nmol/min/ug enzyme with 1-16:0-2-[14C]18:2-PE as substrate (isoform 3) {ECO:0000269 PubMed:10085124};
GENATLAS Biochemistry:
phospholipase A2,group IVB,Ca2+ dependent,cytosolic,more highly expressed in cerebellum and pancreas and more abundantly in beta cells,paralog of PLA2G2A

Enzyme Numbers (IUBMB) for PLA2G4B Gene

Phenotypes From GWAS Catalog for PLA2G4B Gene

Gene Ontology (GO) - Molecular Function for PLA2G4B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004622 lysophospholipase activity NAS 10358058
GO:0004623 phospholipase A2 activity IBA 21873635
GO:0005509 calcium ion binding NAS,IBA 10085124
GO:0005544 calcium-dependent phospholipid binding NAS,IBA 10085124
GO:0016787 hydrolase activity IEA --
genes like me logo Genes that share ontologies with PLA2G4B: view
genes like me logo Genes that share phenotypes with PLA2G4B: view

Animal Models for PLA2G4B Gene

MGI Knock Outs for PLA2G4B:
  • Pla2g4b Pla2g4b<tm1b(EUCOMM)Wtsi>

Animal Model Products

miRNA for PLA2G4B Gene

miRTarBase miRNAs that target PLA2G4B

Clone Products

No data available for Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for PLA2G4B Gene

Localization for PLA2G4B Gene

Subcellular locations from UniProtKB/Swiss-Prot for PLA2G4B Gene

Cytoplasm, cytosol.
[Isoform 3]: Mitochondrion membrane; Peripheral membrane protein. Early endosome membrane; Peripheral membrane protein. Note=Translocates to membrane vesicles in a calcium-dependent fashion.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for PLA2G4B gene
Compartment Confidence
extracellular 5
mitochondrion 5
endosome 5
cytosol 5
plasma membrane 1
cytoskeleton 1
peroxisome 1
nucleus 1
endoplasmic reticulum 1

Gene Ontology (GO) - Cellular Components for PLA2G4B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region TAS 10085124
GO:0005737 cytoplasm IBA 21873635
GO:0005739 mitochondrion IEA --
GO:0005743 mitochondrial inner membrane TAS --
GO:0005768 endosome IEA --
genes like me logo Genes that share ontologies with PLA2G4B: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for PLA2G4B Gene

Pathways & Interactions for PLA2G4B Gene

genes like me logo Genes that share pathways with PLA2G4B: view

Gene Ontology (GO) - Biological Process for PLA2G4B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006629 lipid metabolic process IEA --
GO:0006644 phospholipid metabolic process TAS --
GO:0006654 phosphatidic acid biosynthetic process TAS --
GO:0006954 inflammatory response NAS 10085124
GO:0007567 parturition NAS 10085124
genes like me logo Genes that share ontologies with PLA2G4B: view

No data available for SIGNOR curated interactions for PLA2G4B Gene

Drugs & Compounds for PLA2G4B Gene

Products:

  1. Drug

(17) Drugs for PLA2G4B Gene - From: ApexBio, HMDB, and Tocris

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Clofazimine Approved, Investigational Pharma Tuberculosis drug 37
linoleic acid Approved, Experimental Pharma Full agonist, Agonist, Pore Blocker, Channel blocker 0
Palmitic Acid Approved Pharma Full agonist, Agonist 25
Stearic acid Approved, Experimental Pharma 0
Water Approved Pharma 0

(45) Additional Compounds for PLA2G4B Gene - From: HMDB and Tocris

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
Arachidic acid
  • Arachidinic acid
  • Arachinsaeure
  • C20:0
  • CH3-[CH2]18-COOH
  • Eicosanoic acid
 506-30-9
Heptadecanoic acid
  • 17:0
  • C17:0
  • CH3-[CH2]15-COOH
  • Heptadecoic acid
  • Heptadecylic acid
 506-12-7
Heptadecanoyl CoA
  • Heptadecanoyl-coenzyme A
  • Heptadecanoate
  • Heptadecanoic acid
  • Heptadecanoic acid CoA
  • Heptadecanoyl coenzyme A
 3546-17-6
LysoPC(14:0/0:0)
  • 1-C14:0-Lysophosphatidylcholine betaine
  • 1-Myristoyl-glycero-3-phosphocholine
  • 1-Myristoyl-sn-glycero-3-phosphocholine betaine
  • 1-Tetradecanoyl-sn-glycero-3-phosphocholine
  • 1-Tetradecanoyl-sn-glycero-3-phosphocholine betaine
 20559-16-4
LysoPC(14:1(9Z))
  • 1-(9Z-Tetradecenoyl)-sn-glycero-3-phosphocholine
  • 1-Myristoleoyl-glycero-3-phosphocholine
  • LPC 14:1(9Z)/0:0
  • LPC(14:1(9Z)/0:0)
  • LysoPC 14:1(9Z)/0:0

(5) Tocris Compounds for PLA2G4B Gene

Compound Action Cas Number
AACOCF3 Phospholipase A2 inhibitor 149301-79-1
Edelfosine Selective PI-PLC inhibitor, also PAF receptor agonist 77286-66-9
m-3M3FBS Phospholipase C activator 200933-14-8
o-3M3FBS Inactive analog of m-3M3FBS (Cat. No. 1941) 313981-55-4
U 73122 Phospholipase C inhibitor 112648-68-7

(7) ApexBio Compounds for PLA2G4B Gene

Compound Action Cas Number
Clofazimine Tuberculosis drug 2030-63-9
CP-91149 Selective inhibitor of glycogen phosphorylase 186392-40-5
D609 PC-PLC inhibitor 83373-60-8
PACOCF3 CPLA2 and iPLA2 inhibitor 141022-99-3
SPK-601 Potent PC-PLC inhibitor,antimicrobial agent 1096687-52-3
U 73343 142878-12-4
Varespladib (LY315920) HnsPLA inhibitor,potent and selective 172732-68-2
genes like me logo Genes that share compounds with PLA2G4B: view

Drug Products

Transcripts for PLA2G4B Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for PLA2G4B Gene

1 REFSEQ mRNAs :
10 NCBI additional mRNA sequence :
6 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for PLA2G4B Gene

No ASD Table

Relevant External Links for PLA2G4B Gene

GeneLoc Exon Structure for
PLA2G4B

Expression for PLA2G4B Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for PLA2G4B Gene

mRNA expression in normal human tissues for PLA2G4B Gene
mRNA expression by BioGPS for PLA2G4B GenemRNA expression by GTEx for PLA2G4B Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for PLA2G4B Gene

This gene is overexpressed in Brain - Cerebellum (x5.1) and Brain - Cerebellar Hemisphere (x4.2).

Protein differential expression in normal tissues from HIPED for PLA2G4B Gene

This gene is overexpressed in Urine (33.8) and Cervix (30.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for PLA2G4B Gene



Protein tissue co-expression partners for PLA2G4B Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for PLA2G4B

mRNA Expression by UniProt/SwissProt for PLA2G4B Gene:

P0C869-PA24B_HUMAN
Tissue specificity: Widely expressed. Expressed at higher level in brain, heart, liver, cerebellum and pancreas. Isoform 3 is widely expressed.

Evidence on tissue expression from TISSUES for PLA2G4B Gene

  • Nervous system(4)
genes like me logo Genes that share expression patterns with PLA2G4B: view

No data available for Phenotype-based relationships between genes and organs from Gene ORGANizer for PLA2G4B Gene

Orthologs for PLA2G4B Gene

This gene was present in the common ancestor of animals.

Orthologs for PLA2G4B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia PLA2G4B 30
  • 98.82 (n)
-- 31
  • 98 (a)
 ManyToMany
-- 31
  • 97 (a)
 ManyToMany
cow
(Bos Taurus)
 Mammalia PLA2G4B 31 30
  • 86.44 (n)
 OneToMany
dog
(Canis familiaris)
 Mammalia PLA2G4B 31 30
  • 85.98 (n)
 OneToMany
mouse
(Mus musculus)
 Mammalia Pla2g4b 17 31 30
  • 83.29 (n)
PLA2G4B 31
  • 81 (a)
 ManyToMany
rat
(Rattus norvegicus)
 Mammalia Pla2g4b 30
  • 83.07 (n)
platypus
(Ornithorhynchus anatinus)
 Mammalia -- 31
  • 69 (a)
 OneToMany
chicken
(Gallus gallus)
 Aves PLA2G4B 30
  • 56.19 (n)
-- 31
  • 46 (a)
 OneToMany
lizard
(Anolis carolinensis)
 Reptilia -- 31
  • 46 (a)
 OneToMany
fruit fly
(Drosophila melanogaster)
 Insecta CG10133 32
  • 41 (a)
sea squirt
(Ciona savignyi)
 Ascidiacea -- 31
  • 23 (a)
 ManyToMany
-- 31
  • 19 (a)
 ManyToMany
Species where no ortholog for PLA2G4B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for PLA2G4B Gene

ENSEMBL:
Gene Tree for PLA2G4B (if available)
TreeFam:
Gene Tree for PLA2G4B (if available)
Aminode:
Evolutionary constrained regions (ECRs) for PLA2G4B: view image

Paralogs for PLA2G4B Gene

Paralogs for PLA2G4B Gene

(4) SIMAP similar genes for PLA2G4B Gene using alignment to 2 proteins:

  • PA24B_HUMAN
  • H3BSX5_HUMAN
genes like me logo Genes that share paralogs with PLA2G4B: view

Variants for PLA2G4B Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for PLA2G4B Gene

SNP ID Clinical significance and condition Chr 15 pos Variation AA Info Type
726643 Benign: not provided 41,841,258(+) C/T SYNONYMOUS_VARIANT
rs2290552 - p.Met239Ile
rs34807597 - p.Arg391His
rs36126315 - p.Thr591Ile
rs3816533 - p.Arg191Cys

Additional dbSNP identifiers (rs#s) for PLA2G4B Gene

Structural Variations from Database of Genomic Variants (DGV) for PLA2G4B Gene

Variant ID Type Subtype PubMed ID
dgv2582n100 CNV gain 25217958
nsv1035998 CNV gain 25217958
nsv1038933 CNV gain 25217958
nsv1050892 CNV gain 25217958
nsv1506 CNV insertion 18451855
nsv517631 CNV loss 19592680
nsv9244 CNV gain 18304495
nsv952613 CNV deletion 24416366

Variation tolerance for PLA2G4B Gene

Residual Variation Intolerance Score: 93.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 5.93; 74.50% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for PLA2G4B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PLA2G4B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for PLA2G4B Gene

Disorders for PLA2G4B Gene

MalaCards: The human disease database

(1) MalaCards diseases for PLA2G4B Gene - From: DISEASES

Disorder Aliases PubMed IDs
inflammatory bowel disease 9
  • ibd9
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for PLA2G4B

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
genes like me logo Genes that share disorders with PLA2G4B: view

No data available for UniProtKB/Swiss-Prot and Genatlas for PLA2G4B Gene

Publications for PLA2G4B Gene

  1. Variation at the NFATC2 locus increases the risk of thiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) study. (PMID: 20628086) Bailey SD … DREAM investigators (Diabetes care 2010) 3 41 54
  2. Polymorphisms in innate immunity genes and patients response to dendritic cell-based HIV immuno-treatment. (PMID: 20056178) Segat L … Crovella S (Vaccine 2010) 3 41 54
  3. Identification of the expressed form of human cytosolic phospholipase A2beta (cPLA2beta): cPLA2beta3 is a novel variant localized to mitochondria and early endosomes. (PMID: 16617059) Ghosh M … Leslie CC (The Journal of biological chemistry 2006) 3 4 54
  4. Molecular cloning of two new human paralogs of 85-kDa cytosolic phospholipase A2. (PMID: 10085124) Pickard RT … Sharp JD (The Journal of biological chemistry 1999) 3 4 54
  5. Molecular characterization of cytosolic phospholipase A2-beta. (PMID: 10358058) Song C … Kriz RW (The Journal of biological chemistry 1999) 3 4 54

ExternalLinks

View latest publications for PLA2G4B gene in Mastermind

Products for PLA2G4B Gene

Sources for PLA2G4B Gene