Aliases for PKD1P4 Gene

Aliases for PKD1P4 Gene

  • Polycystin 1, Transient Receptor Potential Channel Interacting Pseudogene 4 2 3
  • Polycystic Kidney Disease 1 (Autosomal Dominant) Pseudogene 4 2 3
  • Polycystic Kidney Disease 1 (Autosomal Dominant) (PKD1) Pseudogene 5
  • AC126755.1 5
  • HG4 3

External Ids for PKD1P4 Gene

Previous GeneCards Identifiers for PKD1P4 Gene

  • GC16U900295
  • GC16M018394
  • GC16M018335
  • GC16M018428
  • GC16M018336
  • GC16M018350

Summaries for PKD1P4 Gene

GeneCards Summary for PKD1P4 Gene

PKD1P4 (Polycystin 1, Transient Receptor Potential Channel Interacting Pseudogene 4) is a Pseudogene. Diseases associated with PKD1P4 include Polycystic Kidney Disease.

Additional gene information for PKD1P4 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PKD1P4 Gene

Genomics for PKD1P4 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for PKD1P4 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J018352 Enhancer 0.2 Ensembl 600.7 +0.6 575 0.2 PKD1P4 PKD1P4-NPIPA8 lnc-NPIPA8-3 NPIPA8 LOC102723728
GH16J018354 Enhancer 0.2 Ensembl 600.7 -0.5 -525 0.4 PKD1P4 PKD1P4-NPIPA8 piR-58496-011 NPIPA8 LOC102723728
GH16J018351 Enhancer 0.2 Ensembl 600.7 +1.0 975 0.2 PKD1P4 PKD1P4-NPIPA8 lnc-NPIPA8-3 NPIPA8 LOC102723728
GH16J018923 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 26.7 -573.2 -573153 5.1 RNF2 SP1 HNRNPL CREB1 GATAD2A PRDM10 ZNF629 TFE3 ZNF512 LEF1 SMG1 ENSG00000260352 LOC107984844 lnc-ARL6IP1-6 PKD1P4 NPIPA8 PKD1P5 ARL6IP1 NPIPA9 RF00017-1996
GH16J018797 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 16.1 -449.8 -449845 9.7 ZNF221 SP1 HNRNPL CREB1 GATAD2A CTCF PRDM10 REST ZNF629 TFE3 ARL6IP1 ENSG00000260017 ENSG00000260342 L13304-013 lnc-TMC7-2 lnc-SMG1-1 NPIPA9 PKD1P4 RPS15A NPIPA8
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PKD1P4 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for PKD1P4 Gene

Genomic Locations for PKD1P4 Gene
chr16:18,334,400-18,352,476
(GRCh38/hg38)
Size:
18,077 bases
Orientation:
Minus strand
chr16:18,428,257-18,446,140
(GRCh37/hg19)
Size:
17,884 bases
Orientation:
Minus strand

Genomic View for PKD1P4 Gene

Genes around PKD1P4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PKD1P4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PKD1P4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PKD1P4 Gene

Proteins for PKD1P4 Gene

Post-translational modifications for PKD1P4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PKD1P4 Gene

Domains & Families for PKD1P4 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PKD1P4 Gene

Function for PKD1P4 Gene

Phenotypes From GWAS Catalog for PKD1P4 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PKD1P4 Gene

Localization for PKD1P4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PKD1P4 Gene

Pathways & Interactions for PKD1P4 Gene

PathCards logo

SuperPathways for PKD1P4 Gene

No Data Available

Gene Ontology (GO) - Biological Process for PKD1P4 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PKD1P4 Gene

Drugs & Compounds for PKD1P4 Gene

No Compound Related Data Available

Transcripts for PKD1P4 Gene

mRNA/cDNA for PKD1P4 Gene

6 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for PKD1P4 Gene

No ASD Table

Relevant External Links for PKD1P4 Gene

GeneLoc Exon Structure for
PKD1P4

Expression for PKD1P4 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PKD1P4 Gene

Orthologs for PKD1P4 Gene

Evolution for PKD1P4 Gene

ENSEMBL:
Gene Tree for PKD1P4 (if available)
TreeFam:
Gene Tree for PKD1P4 (if available)

No data available for Orthologs for PKD1P4 Gene

Paralogs for PKD1P4 Gene

No data available for Paralogs for PKD1P4 Gene

Variants for PKD1P4 Gene

Additional Variant Information for PKD1P4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PKD1P4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for PKD1P4 Gene

Disorders for PKD1P4 Gene

MalaCards: The human disease database

(1) MalaCards diseases for PKD1P4 Gene - From: GeneCards

Disorder Aliases PubMed IDs
polycystic kidney disease
  • pkd
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with PKD1P4: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for PKD1P4 Gene

Publications for PKD1P4 Gene

  1. Genome duplications and other features in 12 Mb of DNA sequence from human chromosome 16p and 16q. (PMID: 10493829) Loftus BJ … Adams MD (Genomics 1999) 2 3
  2. The polycystic kidney disease 1 gene encodes a 14 kb transcript and lies within a duplicated region on chromosome 16. The European Polycystic Kidney Disease Consortium. (PMID: 8004675) (Cell 1994) 2 3
  3. Homologues to the first gene for autosomal dominant polycystic kidney disease are pseudogenes. (PMID: 11414761) Bogdanova N … Dworniczak B (Genomics 2001) 3

Products for PKD1P4 Gene

Sources for PKD1P4 Gene