Aliases for PKD1P3 Gene

Aliases for PKD1P3 Gene

  • Polycystin 1, Transient Receptor Potential Channel Interacting Pseudogene 3 2 3
  • Polycystic Kidney Disease 1 (Autosomal Dominant) Pseudogene 3 2 3
  • HG3 3

External Ids for PKD1P3 Gene

Previous GeneCards Identifiers for PKD1P3 Gene

  • GC16P014945
  • GC16U900473
  • GC16M014918
  • GC16P014912
  • GC16P015005

Summaries for PKD1P3 Gene

GeneCards Summary for PKD1P3 Gene

PKD1P3 (Polycystin 1, Transient Receptor Potential Channel Interacting Pseudogene 3) is a Pseudogene. Diseases associated with PKD1P3 include Polycystic Kidney Disease.

Additional gene information for PKD1P3 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PKD1P3 Gene

Genomics for PKD1P3 Gene

GeneHancer (GH) Regulatory Elements for PKD1P3 Gene

Promoters and enhancers for PKD1P3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J014910 Promoter 0.8 Ensembl 500.7 +0.7 724 3.6 ZIC2 ZBTB26 KLF9 SP2 ZFHX2 SIN3A GLIS1 MAZ SP3 EGR2 ENSG00000183458 ENSG00000258354 LOC101927469 MIR3180-1 PKD1P3 piR-36538-002 piR-58577-002
GH16J014917 Enhancer 0.4 Ensembl 0.4 +8.4 8424 0.6 ZIC2 ZNF423 NFIC ZFP69B KLF1 lnc-NPIPA1-3 lnc-NTAN1-5 ENSG00000183458 PKD1P3
GH16J014928 Enhancer 0.4 Ensembl 0.4 +16.6 16624 0.2 PCBP1 HNRNPK ZNF444 PCBP2 LOC100288162 piR-51780-001 LOC100505915 MIR6770-1 NPIPA1 ENSG00000183458 PKD1P3
GH16J014925 Enhancer 0.2 Ensembl 0.4 +13.9 13924 0.8 MIR6511A1 LOC100288162 piR-50065-001 piR-54150-001 piR-51780-001 NPIPA1 PKD1P3 ENSG00000183458
GH16J014926 Enhancer 0.2 Ensembl 0.4 +15.0 15024 0.6 MIR6511A1 LOC100288162 piR-54150-001 piR-51780-001 NPIPA1 ENSG00000183458 PKD1P3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PKD1P3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PKD1P3 Gene

Genomic Locations for PKD1P3 Gene
chr16:14,911,477-14,935,708
(GRCh38/hg38)
Size:
24,232 bases
Orientation:
Plus strand
chr16:15,005,334-15,029,565
(GRCh37/hg19)
Size:
24,232 bases
Orientation:
Plus strand

Genomic View for PKD1P3 Gene

Genes around PKD1P3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PKD1P3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PKD1P3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PKD1P3 Gene

Proteins for PKD1P3 Gene

Post-translational modifications for PKD1P3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PKD1P3 Gene

Domains & Families for PKD1P3 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PKD1P3 Gene

Function for PKD1P3 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PKD1P3 Gene

Localization for PKD1P3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PKD1P3 Gene

Pathways & Interactions for PKD1P3 Gene

PathCards logo

SuperPathways for PKD1P3 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for PKD1P3 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PKD1P3 Gene

Drugs & Compounds for PKD1P3 Gene

No Compound Related Data Available

Transcripts for PKD1P3 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PKD1P3 Gene

No ASD Table

Relevant External Links for PKD1P3 Gene

GeneLoc Exon Structure for
PKD1P3

No data available for mRNA/cDNA for PKD1P3 Gene

Expression for PKD1P3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for PKD1P3 Gene

mRNA expression in normal human tissues for PKD1P3 Gene
genes like me logo Genes that share expression patterns with PKD1P3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PKD1P3 Gene

Orthologs for PKD1P3 Gene

No data available for Orthologs and Evolution for PKD1P3 Gene

Paralogs for PKD1P3 Gene

No data available for Paralogs for PKD1P3 Gene

Variants for PKD1P3 Gene

Additional Variant Information for PKD1P3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PKD1P3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for PKD1P3 Gene

Disorders for PKD1P3 Gene

MalaCards: The human disease database

(1) MalaCards diseases for PKD1P3 Gene - From: GeneCards

Disorder Aliases PubMed IDs
polycystic kidney disease
  • pkd
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with PKD1P3: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for PKD1P3 Gene

Publications for PKD1P3 Gene

  1. Homologues to the first gene for autosomal dominant polycystic kidney disease are pseudogenes. (PMID: 11414761) Bogdanova N … Dworniczak B (Genomics 2001) 2 3 54
  2. Genome duplications and other features in 12 Mb of DNA sequence from human chromosome 16p and 16q. (PMID: 10493829) Loftus BJ … Adams MD (Genomics 1999) 2 3 54
  3. The polycystic kidney disease 1 gene encodes a 14 kb transcript and lies within a duplicated region on chromosome 16. The European Polycystic Kidney Disease Consortium. (PMID: 8004675) (Cell 1994) 3 54

Products for PKD1P3 Gene

Sources for PKD1P3 Gene