Aliases for PKD1P2 Gene

Aliases for PKD1P2 Gene

  • Polycystin 1, Transient Receptor Potential Channel Interacting Pseudogene 2 2 3
  • Polycystic Kidney Disease 1 (Autosomal Dominant) Pseudogene 2 2 3
  • HG2 3

External Ids for PKD1P2 Gene

Previous GeneCards Identifiers for PKD1P2 Gene

  • GC16P016354
  • GC16U900469
  • GC16P016417
  • GC16P016357
  • GC16P016450
  • GC16P016358
  • GC16P016379
  • GC16P016385
  • GC16P016398
  • GC16P016359
  • GC16P016365
  • GC16P016369

Summaries for PKD1P2 Gene

GeneCards Summary for PKD1P2 Gene

PKD1P2 (Polycystin 1, Transient Receptor Potential Channel Interacting Pseudogene 2) is a Pseudogene. Diseases associated with PKD1P2 include Polycystic Kidney Disease.

Additional gene information for PKD1P2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PKD1P2 Gene

Genomics for PKD1P2 Gene

GeneHancer (GH) Regulatory Elements for PKD1P2 Gene

Promoters and enhancers for PKD1P2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J016356 Enhancer 0.2 Ensembl 500.7 +0.4 384 0.4 ENSG00000227827 PKD1P2 lnc-NPIPA7-4
GH16J016369 Enhancer 0.3 Ensembl 0.4 +13.0 12984 0.4 CREB1 MIR6511A3 lnc-NPIPA7-13 piR-51780-004 PKD1P2 ENSG00000227827
GH16J016368 Enhancer 0.2 Ensembl 0.4 +11.8 11750 0.7 MIR6511A3 lnc-NPIPA7-13 piR-34295-002 piR-51780-004 PKD1P2 ENSG00000227827
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PKD1P2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PKD1P2 Gene

Genomic Locations for PKD1P2 Gene
chr16:16,356,417-16,377,507
(GRCh38/hg38)
Size:
21,091 bases
Orientation:
Plus strand
chr16:16,450,274-16,471,364
(GRCh37/hg19)
Size:
21,091 bases
Orientation:
Plus strand

Genomic View for PKD1P2 Gene

Genes around PKD1P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PKD1P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PKD1P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PKD1P2 Gene

Proteins for PKD1P2 Gene

Post-translational modifications for PKD1P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PKD1P2 Gene

Domains & Families for PKD1P2 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PKD1P2 Gene

Function for PKD1P2 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PKD1P2 Gene

Localization for PKD1P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PKD1P2 Gene

Pathways & Interactions for PKD1P2 Gene

PathCards logo

SuperPathways for PKD1P2 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for PKD1P2 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PKD1P2 Gene

Drugs & Compounds for PKD1P2 Gene

No Compound Related Data Available

Transcripts for PKD1P2 Gene

mRNA/cDNA for PKD1P2 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for PKD1P2 Gene

No ASD Table

Relevant External Links for PKD1P2 Gene

GeneLoc Exon Structure for
PKD1P2

Expression for PKD1P2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for PKD1P2 Gene

mRNA expression in normal human tissues for PKD1P2 Gene
genes like me logo Genes that share expression patterns with PKD1P2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PKD1P2 Gene

Orthologs for PKD1P2 Gene

No data available for Orthologs and Evolution for PKD1P2 Gene

Paralogs for PKD1P2 Gene

No data available for Paralogs for PKD1P2 Gene

Variants for PKD1P2 Gene

Additional Variant Information for PKD1P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PKD1P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for PKD1P2 Gene

Disorders for PKD1P2 Gene

MalaCards: The human disease database

(1) MalaCards diseases for PKD1P2 Gene - From: GeneCards

Disorder Aliases PubMed IDs
polycystic kidney disease
  • pkd
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for PKD1P2

genes like me logo Genes that share disorders with PKD1P2: view

No data available for UniProtKB/Swiss-Prot and Genatlas for PKD1P2 Gene

Publications for PKD1P2 Gene

  1. Homologues to the first gene for autosomal dominant polycystic kidney disease are pseudogenes. (PMID: 11414761) Bogdanova N … Dworniczak B (Genomics 2001) 2 3 54
  2. Genome duplications and other features in 12 Mb of DNA sequence from human chromosome 16p and 16q. (PMID: 10493829) Loftus BJ … Adams MD (Genomics 1999) 2 3 54
  3. A genome-wide association study identifies a novel major locus for glycemic control in type 1 diabetes, as measured by both A1C and glucose. (PMID: 19875614) Paterson AD … Diabetes Control and Complications Trial/Epidemiology of Diabetes Interventions and Complications Research Group (Diabetes 2010) 41 54
  4. The polycystic kidney disease 1 gene encodes a 14 kb transcript and lies within a duplicated region on chromosome 16. The European Polycystic Kidney Disease Consortium. (PMID: 8004675) (Cell 1994) 3 54

Products for PKD1P2 Gene

Sources for PKD1P2 Gene