Aliases for PITRM1-AS1 Gene

Subcategory (RNA class) for PITRM1-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for PITRM1-AS1 Gene

  • PITRM1 Antisense RNA 1 2 3 5
  • HSALNG0075652 167
  • NONHSAG005019 92
  • Lnc-PFKP-42 168
  • PITRM1-AS1 2

External Ids for PITRM1-AS1 Gene

Previous GeneCards Identifiers for PITRM1-AS1 Gene

  • GC10P003185

Summaries for PITRM1-AS1 Gene

GeneCards Summary for PITRM1-AS1 Gene

PITRM1-AS1 (PITRM1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for PITRM1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PITRM1-AS1 Gene

Genomics for PITRM1-AS1 Gene

GeneHancer (GH) Regulatory Elements for PITRM1-AS1 Gene

Promoters and enhancers for PITRM1-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PITRM1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PITRM1-AS1 Gene

Genomic Locations for PITRM1-AS1 Gene
chr10:3,141,601-3,167,972
(GRCh38/hg38)
Size:
26,372 bases
Orientation:
Plus strand
chr10:3,183,793-3,210,164
(GRCh37/hg19)
Size:
26,372 bases
Orientation:
Plus strand

Genomic View for PITRM1-AS1 Gene

Genes around PITRM1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PITRM1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PITRM1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PITRM1-AS1 Gene

Proteins for PITRM1-AS1 Gene

Post-translational modifications for PITRM1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PITRM1-AS1 Gene

Domains & Families for PITRM1-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PITRM1-AS1 Gene

Function for PITRM1-AS1 Gene

Phenotypes From GWAS Catalog for PITRM1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PITRM1-AS1 Gene

Localization for PITRM1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PITRM1-AS1 Gene

Pathways & Interactions for PITRM1-AS1 Gene

PathCards logo

SuperPathways for PITRM1-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for PITRM1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PITRM1-AS1 Gene

Drugs & Compounds for PITRM1-AS1 Gene

No Compound Related Data Available

Transcripts for PITRM1-AS1 Gene

mRNA/cDNA for PITRM1-AS1 Gene

10 RNACentral transcripts :
1 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :
3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
8 NONCODE transcripts :
5 LncBook transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for PITRM1-AS1 Gene

No ASD Table

Relevant External Links for PITRM1-AS1 Gene

GeneLoc Exon Structure for
PITRM1-AS1

Expression for PITRM1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for PITRM1-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for PITRM1-AS1

SOURCE GeneReport for Unigene cluster for PITRM1-AS1 Gene:

Hs.665365
genes like me logo Genes that share expression patterns with PITRM1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PITRM1-AS1 Gene

Orthologs for PITRM1-AS1 Gene

Evolution for PITRM1-AS1 Gene

ENSEMBL:
Gene Tree for PITRM1-AS1 (if available)
TreeFam:
Gene Tree for PITRM1-AS1 (if available)

No data available for Orthologs for PITRM1-AS1 Gene

Paralogs for PITRM1-AS1 Gene

No data available for Paralogs for PITRM1-AS1 Gene

Variants for PITRM1-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for PITRM1-AS1 Gene

SNP ID Clinical significance and condition Chr 10 pos Variation AA Info Type
715910 Likely Benign: not provided 3,147,584(+) G/A NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS_VARIANT
720677 Benign: not provided 3,147,615(+) G/A MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT
730588 Benign: not provided 3,147,611(+) G/A NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS_VARIANT
741487 Likely Benign: not provided 3,147,246(+) C/T MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT
768344 Benign: not provided 3,145,639(+) C/T MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT

Additional dbSNP identifiers (rs#s) for PITRM1-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for PITRM1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv932n54 CNV gain 21841781
esv2730995 CNV deletion 23290073
esv2750891 CNV loss 17911159
esv2759726 CNV gain 17122850
esv3622167 CNV gain 21293372
nsv1039231 CNV loss 25217958
nsv1044106 CNV loss 25217958
nsv428229 CNV gain 18775914
nsv549810 CNV gain 21841781
nsv549814 CNV loss 21841781
nsv549818 CNV gain 21841781

Additional Variant Information for PITRM1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PITRM1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for PITRM1-AS1 Gene

Disorders for PITRM1-AS1 Gene

Additional Disease Information for PITRM1-AS1

No disorders were found for PITRM1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PITRM1-AS1 Gene

Publications for PITRM1-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for PITRM1-AS1 Gene

Sources for PITRM1-AS1 Gene