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Aliases for PITPNM2-AS1 Gene

Subcategory (RNA class) for PITPNM2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for PITPNM2-AS1 Gene

  • PITPNM2 Antisense RNA 1 2 3 5

External Ids for PITPNM2-AS1 Gene

Summaries for PITPNM2-AS1 Gene

GeneCards Summary for PITPNM2-AS1 Gene

PITPNM2-AS1 (PITPNM2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for PITPNM2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PITPNM2-AS1 Gene

Genomics for PITPNM2-AS1 Gene

GeneHancer (GH) Regulatory Elements for PITPNM2-AS1 Gene

Promoters and enhancers for PITPNM2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J123079 Enhancer 0.4 dbSUPER 650.7 -0.2 -177 2.7 ZFHX2 GATA3 RXRA PITPNM2-AS1 PITPNM2 MPHOSPH9 GC12P123016
GH12J122844 Enhancer 0.4 dbSUPER 5.7 -234.1 -234095 6.3 GATA3 ZNF687 ZIC2 PIR62748 VPS37B ENSG00000256092 PITPNM2 PITPNM2-AS1 CDK2AP1 ABCB9 B3GNT4 PIR52335 HIP1R
GH12J123083 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 0.7 +3.7 3702 3.9 NFIB EBF1 POLR2A ZBTB48 EED SMC3 SMARCC2 FOSL2 ZNF600 FOS MPHOSPH9 PITPNM2 ENSG00000256092 C12orf65 PITPNM2-AS1 ENSG00000280381
GH12J123061 Enhancer 1.5 VISTA Ensembl ENCODE dbSUPER 0.4 -17.0 -17017 5.6 FOXA2 MLX ARID4B NEUROD1 DMAP1 ZNF48 ETS1 YY1 SLC30A9 ZNF143 CDK2AP1 PITPNM2 ABCB9 ENSG00000235423 PITPNM2-AS1 GC12P123016
GH12J123088 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 +8.4 8374 2.9 PKNOX1 FOXA2 ARNT ARID4B YY1 TCF12 ZNF766 FOS RXRA NCOA1 MPHOSPH9 PITPNM2 ENSG00000280381 PITPNM2-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PITPNM2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PITPNM2-AS1 Gene

Genomic Locations for PITPNM2-AS1 Gene
chr12:123,081,384-123,084,744
(GRCh38/hg38)
Size:
3,361 bases
Orientation:
Plus strand
chr12:123,565,931-123,569,291
(GRCh37/hg19)
Size:
3,361 bases
Orientation:
Plus strand

Genomic View for PITPNM2-AS1 Gene

Genes around PITPNM2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PITPNM2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PITPNM2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PITPNM2-AS1 Gene

Proteins for PITPNM2-AS1 Gene

Post-translational modifications for PITPNM2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PITPNM2-AS1 Gene

Domains & Families for PITPNM2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PITPNM2-AS1 Gene

Function for PITPNM2-AS1 Gene

Phenotypes From GWAS Catalog for PITPNM2-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PITPNM2-AS1 Gene

Localization for PITPNM2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PITPNM2-AS1 Gene

Pathways & Interactions for PITPNM2-AS1 Gene

SuperPathways for PITPNM2-AS1 Gene

No Data Available

Interacting Proteins for PITPNM2-AS1 Gene

Gene Ontology (GO) - Biological Process for PITPNM2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PITPNM2-AS1 Gene

Drugs & Compounds for PITPNM2-AS1 Gene

No Compound Related Data Available

Transcripts for PITPNM2-AS1 Gene

mRNA/cDNA for PITPNM2-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for PITPNM2-AS1 Gene

No ASD Table

Relevant External Links for PITPNM2-AS1 Gene

GeneLoc Exon Structure for
PITPNM2-AS1
ECgene alternative splicing isoforms for
PITPNM2-AS1

Expression for PITPNM2-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PITPNM2-AS1 Gene

Orthologs for PITPNM2-AS1 Gene

Evolution for PITPNM2-AS1 Gene

ENSEMBL:
Gene Tree for PITPNM2-AS1 (if available)
TreeFam:
Gene Tree for PITPNM2-AS1 (if available)

No data available for Orthologs for PITPNM2-AS1 Gene

Paralogs for PITPNM2-AS1 Gene

No data available for Paralogs for PITPNM2-AS1 Gene

Variants for PITPNM2-AS1 Gene

Sequence variations from dbSNP and Humsavar for PITPNM2-AS1 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000837203 -- 123,081,032(+) C/T upstream_transcript_variant
rs1001309026 -- 123,081,371(+) C/T upstream_transcript_variant
rs1001370431 -- 123,084,741(+) C/A non_coding_transcript_variant
rs1002383307 -- 123,080,092(+) G/A upstream_transcript_variant
rs1002758804 -- 123,079,636(+) C/T upstream_transcript_variant

Additional Variant Information for PITPNM2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PITPNM2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for PITPNM2-AS1 Gene

Disorders for PITPNM2-AS1 Gene

Additional Disease Information for PITPNM2-AS1

No disorders were found for PITPNM2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PITPNM2-AS1 Gene

Publications for PITPNM2-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for PITPNM2-AS1 Gene

Sources for PITPNM2-AS1 Gene

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