Aliases for PITPNM2-AS1 Gene

Data sources for PITPNM2-AS1 Gene:

Subcategory (RNA class) for PITPNM2-AS1 Gene

lncRNA

Aliases for PITPNM2-AS1 Gene

External Ids for PITPNM2-AS1 Gene

Previous GeneCards Identifiers for PITPNM2-AS1 Gene

  • GC12P123082

Summaries for PITPNM2-AS1 Gene

GeneCards Summary for PITPNM2-AS1 Gene

PITPNM2-AS1 (PITPNM2 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for PITPNM2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PITPNM2-AS1 Gene

Genomics for PITPNM2-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for PITPNM2-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PITPNM2-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for PITPNM2-AS1 Gene

Latest Assembly
chr12:123,081,325-123,089,775
(GRCh38/hg38)
Size:
8,451 bases
Orientation:
Plus strand

Previous Assembly
chr12:123,565,931-123,569,291
(GRCh37/hg19 by Entrez Gene)
Size:
3,361 bases
Orientation:
Plus strand

chr12:123,565,931-123,569,291
(GRCh37/hg19 by Ensembl)
Size:
3,361 bases
Orientation:
Plus strand

Genomic View for PITPNM2-AS1 Gene

Genes around PITPNM2-AS1 on UCSC Golden Path with GeneCards custom track
PITPNM2-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
PITPNM2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PITPNM2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PITPNM2-AS1 Gene

Proteins for PITPNM2-AS1 Gene

Post-translational modifications for PITPNM2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PITPNM2-AS1 Gene

Domains & Families for PITPNM2-AS1 Gene

Gene Families for PITPNM2-AS1 Gene

genes like me logo Genes that share domains with PITPNM2-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PITPNM2-AS1 Gene

Function for PITPNM2-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PITPNM2-AS1 Gene

Localization for PITPNM2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PITPNM2-AS1 Gene

Pathways & Interactions for PITPNM2-AS1 Gene

PathCards logo

SuperPathways for PITPNM2-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for PITPNM2-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PITPNM2-AS1 Gene

Drugs & Compounds for PITPNM2-AS1 Gene

No Compound Related Data Available

Transcripts for PITPNM2-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for PITPNM2-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001ED869_9606 lncRNA 2194 5

RefSeq: NR_038290,

Ensembl: ENST00000506255 (view in UCSC) ,

LncBook: HSALNT0196303,

LNCipedia: PITPNM2-AS1:6,

NONCODE: NONHSAT031561.2,

URS000012BFBA_9606 lncRNA 1067 4

Ensembl: ENST00000537292 (view in UCSC) ,

LncBook: HSALNT0196307,

LNCipedia: PITPNM2-AS1:8,

NONCODE: NONHSAT031563.2,

URS00008B69EC_9606 lncRNA 628 3

LncBook: HSALNT0196308,

LNCipedia: PITPNM2-AS1:9,

NONCODE: NONHSAT031564.2,

URS00008BA771_9606 lncRNA 555 3

LncBook: HSALNT0196305,

LNCipedia: PITPNM2-AS1:7,

NONCODE: NONHSAT031562.2,

URS00009C0243_9606 lncRNA 2289 2

LncBook: HSALNT0196304,

NONCODE: NONHSAT162922.1,

PITPNM2-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for PITPNM2-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for PITPNM2-AS1 Gene

No ASD Table

Relevant External Links for PITPNM2-AS1 Gene

GeneLoc Exon Structure for
PITPNM2-AS1

Expression for PITPNM2-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PITPNM2-AS1 Gene

Orthologs for PITPNM2-AS1 Gene

Evolution for PITPNM2-AS1 Gene

ENSEMBL:
Gene Tree for PITPNM2-AS1 (if available)
TreeFam:
Gene Tree for PITPNM2-AS1 (if available)

No data available for Orthologs for PITPNM2-AS1 Gene

Paralogs for PITPNM2-AS1 Gene

No data available for Paralogs for PITPNM2-AS1 Gene

Variants for PITPNM2-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for PITPNM2-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for PITPNM2-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv22n68 CNV loss 17160897
nsv455732 CNV loss 19166990
nsv517200 CNV loss 19592680
nsv560492 CNV loss 21841781

Additional Variant Information for PITPNM2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PITPNM2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for PITPNM2-AS1 Gene

Disorders for PITPNM2-AS1 Gene

Additional Disease Information for PITPNM2-AS1

No disorders were found for PITPNM2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PITPNM2-AS1 Gene

Publications for PITPNM2-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for PITPNM2-AS1 Gene

Products for PITPNM2-AS1 Gene

Sources for PITPNM2-AS1 Gene