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Aliases for PIRC56 Gene

Quality Score for this RNA gene is

13

Aliases for PIRC56 Gene

  • Piwi-Interacting RNA Cluster 56 2 3

External Ids for PIRC56 Gene

Previous GeneCards Identifiers for PIRC56 Gene

  • GC00U929990
  • GC12U901247
  • GC12M121154
  • GC12M121157

Summaries for PIRC56 Gene

GeneCards Summary for PIRC56 Gene

PIRC56 (Piwi-Interacting RNA Cluster 56) is an RNA Gene.

PIRC56 is one of the 114 clusters of piRNAs as reported by HGNC

Additional gene information for PIRC56 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and fRNAdb sequence ontologies for PIRC56 Gene

Genomics for PIRC56 Gene

GeneHancer (GH) Regulatory Elements for PIRC56 Gene

Promoters and enhancers for PIRC56 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J120741 Enhancer 0.6 ENCODE 650.7 -0.2 -173 1.1 IRF2 RXRA KAT7 ERF ELF1 KDM3A THRB SP1 POLR2A HNF4G PIRC56 ACADS SPPL3 ENSG00000255946
GH12J120724 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 0.4 +16.3 16257 2.2 HDGF ATF1 ARID4B SIN3A DMAP1 ZNF48 YY1 ZNF280A ZNF121 POLR2B ACADS RPL31P52 ANAPC5 KDM2B UNC119B PIRC56
GH12J120759 Enhancer 0.8 Ensembl ENCODE 0.4 -19.2 -19172 3.7 SCRT1 CTCF MAX ELF1 MNT ZIC2 OSR2 ZNF217 ZFHX2 GATA3 ENSG00000255946 ACADS C12orf43 COQ5 SPPL3 PIRC56
GH12J120718 Enhancer 1 ENCODE dbSUPER 0.3 +22.3 22334 3.2 HDAC1 FOXA2 TEAD4 TAL1 MAX BACH1 YY1 FOSL1 TCF12 ZNF316 GC12P120781 GC12P120782 GC12M120912 GC12M120915 PIR38918 PIR33037 PIR36191 PIR52494 PIR44771 PIR45147
GH12J120738 Enhancer 0.4 ENCODE 0.7 +4.0 4010 0.2 CTCF RAD21 ACADS PIRC56
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIRC56 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIRC56 Gene

Genomic Locations for PIRC56 Gene
chr12:120,714,774-120,742,183
(GRCh38/hg38)
Size:
27,410 bases
Orientation:
Minus strand
chr12:121,152,577-121,179,986
(GRCh37/hg19)
Size:
27,410 bases
Orientation:
Minus strand

Genomic View for PIRC56 Gene

Genes around PIRC56 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PIRC56 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIRC56 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for PIRC56 Gene

Proteins for PIRC56 Gene

Post-translational modifications for PIRC56 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIRC56 Gene

Domains & Families for PIRC56 Gene

Gene Families for PIRC56 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with PIRC56: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIRC56 Gene

Function for PIRC56 Gene

Phenotypes From GWAS Catalog for PIRC56 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIRC56 Gene

Localization for PIRC56 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIRC56 Gene

Pathways & Interactions for PIRC56 Gene

SuperPathways for PIRC56 Gene

No Data Available

Interacting Proteins for PIRC56 Gene

Gene Ontology (GO) - Biological Process for PIRC56 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIRC56 Gene

Drugs & Compounds for PIRC56 Gene

No Compound Related Data Available

Transcripts for PIRC56 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for PIRC56 Gene

No ASD Table

Relevant External Links for PIRC56 Gene

GeneLoc Exon Structure for
PIRC56
ECgene alternative splicing isoforms for
PIRC56

No data available for mRNA/cDNA for PIRC56 Gene

Expression for PIRC56 Gene

NURSA nuclear receptor signaling pathways regulating expression of PIRC56 Gene:

PIRC56
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIRC56 Gene

Orthologs for PIRC56 Gene

No data available for Orthologs and Evolution for PIRC56 Gene

Paralogs for PIRC56 Gene

No data available for Paralogs for PIRC56 Gene

Variants for PIRC56 Gene

Additional Variant Information for PIRC56 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PIRC56

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for PIRC56 Gene

Disorders for PIRC56 Gene

No disorders were found for PIRC56 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIRC56 Gene

Publications for PIRC56 Gene

  1. piRNABank: a web resource on classified and clustered Piwi-interacting RNAs. (PMID: 17881367) Sai Lakshmi S … Agrawal S (Nucleic acids research 2008) 2 3 58

Products for PIRC56 Gene

Sources for PIRC56 Gene

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