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Aliases for PIRC54 Gene

Quality Score for this RNA gene is

13

Aliases for PIRC54 Gene

  • Piwi-Interacting RNA Cluster 54 2 3

External Ids for PIRC54 Gene

Previous GeneCards Identifiers for PIRC54 Gene

  • GC00U925698
  • GC12U901291
  • GC12M009467

Summaries for PIRC54 Gene

GeneCards Summary for PIRC54 Gene

PIRC54 (Piwi-Interacting RNA Cluster 54) is an RNA Gene.

PIRC54 is one of the 114 clusters of piRNAs as reported by HGNC

Additional gene information for PIRC54 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and fRNAdb sequence ontologies for PIRC54 Gene

Genomics for PIRC54 Gene

GeneHancer (GH) Regulatory Elements for PIRC54 Gene

Promoters and enhancers for PIRC54 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J009363 Enhancer 1.1 Ensembl ENCODE 0.7 +4.4 4446 2.5 PKNOX1 SMAD1 DMAP1 IRF4 ZNF48 ATF7 FOS RUNX3 GTF2B JUNB GC12M012212 GC12M012236 GC12M012251 GC12M012269 GC12M012301 GC12P009771 GC12P009782 PIR54085 PIR46832 PIR39992
GH12J009331 Enhancer 0.9 Ensembl ENCODE 0.3 +38.1 38054 0.4 CTCF IRF2 ARID4B ERF IRF4 RAD21 EED ZNF143 SMC3 ZNF444 GC12M012221 GC12M012238 GC12M012239 GC12M012253 GC12M012258 GC12M012259 GC12M012260 GC12M012265 GC12M012270 GC12M012274
GH12J009346 Enhancer 0.7 ENCODE 0.3 +22.1 22094 1.5 ATF1 GTF2E2 NFRKB BACH1 ZMYM3 CEBPG ZNF766 POLR2A VEZF1 ZNF639 GC12M012297 GC12P009759 GC12P009761 GC12P009762 GC12P009763 GC12P009765 GC12P009772 GC12P009775 GC12P009777 GC12P009778
GH12J009339 Enhancer 0.7 ENCODE 0.3 +29.0 29001 1.5 MEIS2 PKNOX1 ATF1 ZBTB21 JUN CEBPG ZNF644 FOSL1 ZNF766 TRIM24 GC12M012211 GC12M012218 GC12M012222 GC12M012257 GC12M012266 GC12M012281 PIR46838 PIR55942 PIR56679 PIR56799
GH12J009350 Enhancer 0.5 ENCODE 0.4 +19.1 19097 0.2 SOX5 FOXA2 FOXA3 NR2F6 ZNF7 GC12M012216 GC12M012220 GC12M012267 GC12P009759 GC12P009760 GC12P009761 GC12P009762 GC12P009764 PIR38019 PIR54898
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIRC54 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIRC54 Gene

Genomic Locations for PIRC54 Gene
chr12:9,314,462-9,369,477
(GRCh38/hg38)
Size:
55,016 bases
Orientation:
Minus strand
chr12:9,467,058-9,522,073
(GRCh37/hg19)

Genomic View for PIRC54 Gene

Genes around PIRC54 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PIRC54 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIRC54 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for PIRC54 Gene

Proteins for PIRC54 Gene

Post-translational modifications for PIRC54 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIRC54 Gene

Domains & Families for PIRC54 Gene

Gene Families for PIRC54 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with PIRC54: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIRC54 Gene

Function for PIRC54 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIRC54 Gene

Localization for PIRC54 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIRC54 Gene

Pathways & Interactions for PIRC54 Gene

SuperPathways for PIRC54 Gene

No Data Available

Interacting Proteins for PIRC54 Gene

Gene Ontology (GO) - Biological Process for PIRC54 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIRC54 Gene

Drugs & Compounds for PIRC54 Gene

No Compound Related Data Available

Transcripts for PIRC54 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for PIRC54 Gene

No ASD Table

Relevant External Links for PIRC54 Gene

GeneLoc Exon Structure for
PIRC54
ECgene alternative splicing isoforms for
PIRC54

No data available for mRNA/cDNA for PIRC54 Gene

Expression for PIRC54 Gene

NURSA nuclear receptor signaling pathways regulating expression of PIRC54 Gene:

PIRC54
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIRC54 Gene

Orthologs for PIRC54 Gene

No data available for Orthologs and Evolution for PIRC54 Gene

Paralogs for PIRC54 Gene

No data available for Paralogs for PIRC54 Gene

Variants for PIRC54 Gene

Additional Variant Information for PIRC54 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PIRC54

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for PIRC54 Gene

Disorders for PIRC54 Gene

No disorders were found for PIRC54 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIRC54 Gene

Publications for PIRC54 Gene

  1. piRNABank: a web resource on classified and clustered Piwi-interacting RNAs. (PMID: 17881367) Sai Lakshmi S … Agrawal S (Nucleic acids research 2008) 2 3 58

Products for PIRC54 Gene

Sources for PIRC54 Gene

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