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Aliases for PIR62561 Gene

Subcategory (RNA class) for PIR62561 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR62561 Gene

No Aliases found

ORGUL Members for PIR62561 Gene

Previous GeneCards Identifiers for PIR62561 Gene

  • GC16P009763

No data available for External Ids for PIR62561 Gene

Summaries for PIR62561 Gene

GeneCards Summary for PIR62561 Gene

PIR62561 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR62561 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR62561 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR62561 Gene

Genomics for PIR62561 Gene

GeneHancer (GH) Regulatory Elements for PIR62561 Gene

Promoters and enhancers for PIR62561 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J009669 Enhancer 0.5 ENCODE dbSUPER 600.7 +0.6 638 1 PKNOX1 PIR62561 ENSG00000260362
GH16J009670 Enhancer 0.3 ENCODE 600.7 +1.4 1372 0.2 NANOG PIR62561 ENSG00000260362
GH16J009677 Promoter/Enhancer 1 Ensembl ENCODE dbSUPER 0.4 +6.0 5998 4.9 CBFA2T3 ENSG00000260362 ENSG00000260276 PIR62561 GC16M009671
GH16J009665 Enhancer 0.6 Ensembl ENCODE 0.7 -3.6 -3582 1 POLR2A FOS JUND ENSG00000260362 PIR62561 GC16M009635
GH16J009648 Enhancer 0.9 Ensembl ENCODE 0.3 -21.1 -21066 0.8 ELF3 CTCF CEBPG ZNF644 RAD21 IKZF1 CEBPA PHF21A REST PKNOX1 C16orf72 GC16M009635 PIR62561 LOC101927026
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR62561 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR62561 Gene

Genomic Locations for PIR62561 Gene
chr16:9,669,467-9,669,493
(GRCh38/hg38)
Size:
27 bases
Orientation:
Plus strand
chr16:9,763,324-9,763,350
(GRCh37/hg19)
Size:
27 bases
Orientation:
Plus strand

Genomic View for PIR62561 Gene

Genes around PIR62561 on UCSC Golden Path with GeneCards custom track

PIR62561 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR62561 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR62561 Gene

Proteins for PIR62561 Gene

Post-translational modifications for PIR62561 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR62561 Gene

Domains & Families for PIR62561 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR62561 Gene

Function for PIR62561 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR62561 Gene

Localization for PIR62561 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR62561 Gene

Pathways & Interactions for PIR62561 Gene

PathCards logo

SuperPathways for PIR62561 Gene

No Data Available

Interacting Proteins for PIR62561 Gene

Gene Ontology (GO) - Biological Process for PIR62561 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR62561 Gene

Drugs & Compounds for PIR62561 Gene

No Compound Related Data Available

Transcripts for PIR62561 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR62561 Gene

No ASD Table

Relevant External Links for PIR62561 Gene

GeneLoc Exon Structure for
PIR62561

No data available for mRNA/cDNA for PIR62561 Gene

Expression for PIR62561 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR62561 Gene

Orthologs for PIR62561 Gene

No data available for Orthologs and Evolution for PIR62561 Gene

Paralogs for PIR62561 Gene

No data available for Paralogs for PIR62561 Gene

Variants for PIR62561 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR62561 Gene

Disorders for PIR62561 Gene

No disorders were found for PIR62561 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR62561 Gene

Publications for PIR62561 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

No data available for External Links for PIR62561 Gene

Products for PIR62561 Gene

Sources for PIR62561 Gene

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