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Aliases for PIR60620 Gene

Subcategory (RNA class) for PIR60620 Gene

piRNA

Quality Score for this RNA gene is

6

Aliases for PIR60620 Gene

No Aliases found

ORGUL Members for PIR60620 Gene

Previous GeneCards Identifiers for PIR60620 Gene

  • GC0XM153352

No data available for External Ids for PIR60620 Gene

Summaries for PIR60620 Gene

GeneCards Summary for PIR60620 Gene

PIR60620 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR60620 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR60620 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR60620 Gene

Genomics for PIR60620 Gene

GeneHancer (GH) Regulatory Elements for PIR60620 Gene

Promoters and enhancers for PIR60620 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XI154093 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 0.4 -8.9 -8900 4.8 PKNOX1 ATF1 SIN3A ZNF2 YY1 ZNF766 GLIS2 FOS RUNX3 SP3 MECP2 DKC1 TMEM187 SNORA70 IRAK1 SLC10A3 SNORA56 PIR60620
GH0XI154090 Enhancer 0.9 Ensembl ENCODE 0.8 -4.6 -4578 2.4 HDAC1 CTCF ETV1 E4F1 CC2D1A BRD9 EGR1 CREM SMARCE1 RFX1 IRAK1 TMEM187 PIR60620 MECP2
GH0XI154081 Enhancer 0.8 Ensembl ENCODE 0.8 +4.6 4570 2.6 HDGF MXI1 JUN MAX CEBPB NR2F2 JUND POLR3A ZNF341 IKZF1 TMEM187 PIR60620 MECP2 IRAK1
GH0XI154123 Enhancer 1.4 FANTOM5 Ensembl ENCODE 0.3 -36.5 -36472 1.4 PKNOX1 SMAD1 ATF1 ARNT FEZF1 TCF12 ZNF766 GATA2 E2F8 ATF7 RENBP MECP2 ARHGAP4 IKBKG PIR60620
GH0XI154038 Enhancer 1.3 FANTOM5 Ensembl ENCODE 0.3 +44.2 44164 9.2 CTCF ZSCAN4 ZNF133 MAX EBF1 CEBPG FEZF1 ZIC2 RAD21 TEAD3 TMEM187 HCFC1 HCFC1-AS1 IKBKG ABCD1 DNASE1L1 MECP2 FAM50A ATP6AP1 EMD
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR60620 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR60620 Gene

Genomic Locations for PIR60620 Gene
chrX:154,087,442-154,087,468
(GRCh38/hg38)
Size:
27 bases
Orientation:
Minus strand
chrX:153,352,895-153,352,921
(GRCh37/hg19)

Genomic View for PIR60620 Gene

Genes around PIR60620 on UCSC Golden Path with GeneCards custom track

PIR60620 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR60620 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR60620 Gene

Proteins for PIR60620 Gene

Post-translational modifications for PIR60620 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR60620 Gene

Domains & Families for PIR60620 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR60620 Gene

Function for PIR60620 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR60620 Gene

Localization for PIR60620 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR60620 Gene

Pathways & Interactions for PIR60620 Gene

SuperPathways for PIR60620 Gene

No Data Available

Interacting Proteins for PIR60620 Gene

Gene Ontology (GO) - Biological Process for PIR60620 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR60620 Gene

Drugs & Compounds for PIR60620 Gene

No Compound Related Data Available

Transcripts for PIR60620 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR60620 Gene

No ASD Table

Relevant External Links for PIR60620 Gene

GeneLoc Exon Structure for
PIR60620

No data available for mRNA/cDNA for PIR60620 Gene

Expression for PIR60620 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR60620 Gene

Orthologs for PIR60620 Gene

No data available for Orthologs and Evolution for PIR60620 Gene

Paralogs for PIR60620 Gene

No data available for Paralogs for PIR60620 Gene

Variants for PIR60620 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR60620 Gene

Disorders for PIR60620 Gene

No disorders were found for PIR60620 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR60620 Gene

Publications for PIR60620 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR60620 Gene

Sources for PIR60620 Gene

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