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Aliases for PIR59553 Gene

Subcategory (RNA class) for PIR59553 Gene

piRNA

Quality Score for this RNA gene is

6

Aliases for PIR59553 Gene

No Aliases found

ORGUL Members for PIR59553 Gene

Previous GeneCards Identifiers for PIR59553 Gene

  • GC17M046154

No data available for External Ids for PIR59553 Gene

Summaries for PIR59553 Gene

GeneCards Summary for PIR59553 Gene

PIR59553 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR59553 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR59553 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR59553 Gene

Genomics for PIR59553 Gene

GeneHancer (GH) Regulatory Elements for PIR59553 Gene

Promoters and enhancers for PIR59553 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I048073 Enhancer 1 ENCODE dbSUPER 0.8 +2.6 2630 2.1 CTCF SAP130 ARID4B MAX ZSCAN9 RAD21 ZNF664 ZFHX2 GATAD1 ZNF366 SNX11 CDK5RAP3 PIR59553 ENSG00000278765 CBX1
GH17I048080 Enhancer 0.6 ENCODE 0.8 -3.5 -3485 0.2 HDGF SMARCA5 CTCF ZNF654 TEAD1 TRIM22 ZEB2 RAD21 KLF16 SMC3 PIR59553 RNU6-1201P GC17M048089 CBX1
GH17I048068 Enhancer 0.7 ENCODE dbSUPER 0.4 +8.1 8146 0.5 CTCF POLR2A HNF4A ZNF600 PRDM1 MIXL1 ENSG00000278765 PIR59553
GH17I048069 Enhancer 0.5 dbSUPER 0.4 +6.2 6173 2.8 SREBF1 ZNF664 RXRA HNF4A PRDM4 SNX11 COPZ2 PRR15L ENSG00000278765 PIR59553 CBX1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR59553 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR59553 Gene

Genomic Locations for PIR59553 Gene
chr17:48,076,893-48,076,919
(GRCh38/hg38)
Size:
27 bases
Orientation:
Minus strand
chr17:46,154,255-46,154,281
(GRCh37/hg19)

Genomic View for PIR59553 Gene

Genes around PIR59553 on UCSC Golden Path with GeneCards custom track

PIR59553 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR59553 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR59553 Gene

Proteins for PIR59553 Gene

Post-translational modifications for PIR59553 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR59553 Gene

Domains & Families for PIR59553 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR59553 Gene

Function for PIR59553 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR59553 Gene

Localization for PIR59553 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR59553 Gene

Pathways & Interactions for PIR59553 Gene

SuperPathways for PIR59553 Gene

No Data Available

Interacting Proteins for PIR59553 Gene

Gene Ontology (GO) - Biological Process for PIR59553 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR59553 Gene

Drugs & Compounds for PIR59553 Gene

No Compound Related Data Available

Transcripts for PIR59553 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR59553 Gene

No ASD Table

Relevant External Links for PIR59553 Gene

GeneLoc Exon Structure for
PIR59553

No data available for mRNA/cDNA for PIR59553 Gene

Expression for PIR59553 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR59553 Gene

Orthologs for PIR59553 Gene

No data available for Orthologs and Evolution for PIR59553 Gene

Paralogs for PIR59553 Gene

No data available for Paralogs for PIR59553 Gene

Variants for PIR59553 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR59553 Gene

Disorders for PIR59553 Gene

No disorders were found for PIR59553 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR59553 Gene

Publications for PIR59553 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR59553 Gene

Sources for PIR59553 Gene

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